BAC Information

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BAC

Clone NameMSMg01-348N12
Chromosome2 (Build37)
Map Location 145,488,910 - 145,489,152
singlet/doubletsinglet
Overlap genenone
Upstream geneDtd1, 1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643
Downstream geneLOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348N12.T7 (MSMg01no348_n12.b1)MSMg01-348N12.TJ (MSMg01no348_n12.g1)
ACCAG460842AG460843
length7201,042
length of high quality
(start - end)
243 (60 - 302)---
definitionCHROMAT_FILE: MSMg01no348_n12.b1 PHD_FILE: MSMg01no348_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:17 2005CHROMAT_FILE: MSMg01no348_n12.g1 PHD_FILE: MSMg01no348_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGTGGCCGCTAAACGAATATTTTCAAAAGAGGATCCGCGGAATTCTGAT
AACACAAAATCACAGTACAGGTCTGCCTCGGGAGGGAGGACATCTCCCAG
ACAAGTCTGTTTTAACCTGCAGTGACCAGGTAAATGGACAAAGGAAAAGC
CTGTCCCACATTCTTCCCTCATGAAGATGACCTGTCAAGTCCATATTGCA
ATCTTTGAATCAGCCAACCAAAGATCAGTGGTGTCTTCTCTTCATGTCCC
AGGACGTTGTAAGCCTCTGAATTCCTATTTGGTGTGGGTTAGTGGGGACT
AGACTTCTTGGCATTGCACGGTAACGTGTGGTGCCCCATCCCTCTCAGCT
TTCACCAGTGTAGCTTCATTGTAAGGGATTTGTGTTTCTCCTCCAAATTT
TCTTCTAGAACGCTTGACCCCTTAGGTCAGCAGGCATTTTTCTACCAGCT
GACAGCCCAGGGCATTTGTCTCAGGGCTGGACCTCATCCTTTTGGCCAGC
TTCTGTGTACCTCAATAAAGGCCCTTGTTTCTTAGCCCCCTGTGCCTTAC
TGAACATACAGACTACCATACAAGCATTCACCTATTCACATATATTCTTG
AAGGTCCACTATTCACCCTCTAACAATTATTCAAAGTATCTCTTATACTA
ATGTATAACACCACAGCACGATGAGTCTATTACAAAACACCATCCCATTC
TTTGAACCATGAAGTTGCGG
AGGAGAACACCAACAGCGCGCCGCAATGTATAATATAAAAAAGTGAGGAG
GCNCAAAAAGACGGAACGCATATGCATAGAGCATTTACCTACGCGCGCGC
CGGGGCGGCGGATGATGAGCCGGAGCGGAGATATATAATTATTTGCCACG
CGACAAGACAGAGGGTATATATAAATCAATAGATGGCTAGGTGGCGGGTC
ACACATAATACAGCTGCTAGCGCCCGCCCCGTTTGGCTCTACGACCGTCC
CANAGGTACAGCAGAGATACACTCTTTGTCCACGTATTTGTGTTTCCGGG
TCGGCGTTTCTTGCGTAGCGTGTGAGCCGCCGCGGCGCACTTAATAACGT
TCGGCTGCCGGCATAGACATTTTTTCCCCGTCGCTTTATTCGCGGGGTCG
CGAGTGTTGGGCGACTATGTGGGCGCGTTTGGTCGCTTTTCGCTTGCCCG
TCGCCATTATATGCGGGAGGCGGATTAATATCGCGGATCGAACCACACCC
GCTGGCTATTGAACCATCTTATCCATGTGACATAAACTAGAGATACAGAC
GCATTTTGCGCCGTGTTCACCCCCTCTCTCAATATGGTTCGCGGCGCGCC
GGTGTGATTATCCTGCGTTAGGCAATGTCAGCATAGTAGGCGTCTCACCT
ATTATACAGGCGCGGTATGGGTAAGCGGTGGAAAAGATGAAATAAAGTTA
GTGTACACAGATTTTGCGAATACACCGTAATCCGCCCGCCACGCTGATAT
CTTTCGGTCCACGTGGTTCCACCCGCGGCTCTTATAATGTGATTTCGCTA
TGTTTGCGTCCTGTGGGCCCGCTGCTATGTTCGTTGCTTGTGTACGCCGT
GAGTCTCTATTCACCCGGCGGTTTCGATGGGTATCCAATGCGGTTAGTCT
CGGCTTAGATGTATTTCCGAGCGGTGGCGACGGGACGAGAGGCGGAGGAA
GCGAGTGTCGAGTCGATCCGCCGAAGCACGTGTGTGATTTAGAGCGCGCG
TAATGTGCTATGTGTTATCACCCACTAGCGTTTATCTATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_n12.b1 MSMg01no348_n12.b1 CHROMAT_FILE:
MSMg01no348_n12.b1 PHD_FILE: MSMg01no348_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:17 2005
         (243 letters)



>mm_chr2_145488710_145489352
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagtacaggtctgcctcgggagggaggacatctcccagacaagtctgttttaacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcacagtacaggtctgcctcgggagggaggacatctcccagacaagtctgttttaacctg 384

                                                                       
Query: 61  cagtgaccaggtaaatggacaaaggaaaagcctgtcccacattcttccctcatgaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagtgaccaggtaaatggacaaaggaaaagcctgtcccacattcttccctcatgaagatg 324

                                                                       
Query: 121 acctgtcaagtccatattgcaatctttgaatcagccaaccaaagatcagtggtgtcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acctgtcaagtccatattgcaatctttgaatcagccaaccaaagatcagtggtgtcttct 264

                                                                       
Query: 181 cttcatgtcccaggacgttgtaagcctctgaattcctatttggtgtgggttagtggggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cttcatgtcccaggacgttgtaagcctctgaattcctatttggtgtgggttagtggggac 204

              
Query: 241 tag 243
           |||
Sbjct: 203 tag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)