Query= MSMg01no348_o19.b1 MSMg01no348_o19.b1 CHROMAT_FILE:
MSMg01no348_o19.b1 PHD_FILE: MSMg01no348_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:23 2005
(576 letters)
>mm_chr2_22318328_22319305
Length = 978
Score = 1060 bits (548), Expect = 0.0
Identities = 570/578 (98%), Gaps = 2/578 (0%)
Strand = Plus / Plus
Query: 1 ttattttttcattttccttacaaaagaagcacatcattactgctccaaagcaaattttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattttttcattttccttacaaaagaagcacatcattactgctccaaagcaaattttct 260
Query: 61 cccaataatagagtttgacaaagtgcttctaataatttaaggcatcccactga--ttttt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 cccaataatagagtttgacaaagtgcttctaataatttaaggcatcccactgattttttt 320
Query: 119 ctccagtgacagagctttttcctatttagagtgtatcctattcttttatttttaatactg 178
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ctccagtgacatagctttttcctatttagagtgtatcctgttcttttatttttaatactg 380
Query: 179 gcatacactcccacagttctttacttgttgtgaatttcatttacatcctagaaaatcaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatacactcccacagttctttacttgttgtgaatttcatttacatcctagaaaatcaca 440
Query: 239 atactgttttttaggcatttttttccattttacttatttcattggtccggtcctgtctct 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactattttttaggcatttttttccattttacttatttcattggtccggtcctgtctct 500
Query: 299 aagatccctattttttgcatcctttgtggctttggaggtggtttgcaataaagggagcag 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aagatccctattttttgcatcctttgtggctttggaggtggtttgtaataaagggagcag 560
Query: 359 atgtttaaggttaacatagtgatttccatgtacctggaacccttgtggacacctctgatt 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtttaaggttaacatagtgattgccatgtacctggaacccttgtggacacctctgatt 620
Query: 419 ttccatgtgtaaaataattgattaacacacaagatactaagtaactggacaggaattaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccatgtgtaaaataattgattaacacacaagatactaagtaactggacaggaattaat 680
Query: 479 agccatgtaatcccattgataaaatacagttgtaaacaccaccacccaagtcataattga 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agccatgtaatgccattgataaaatacagttgtaaacaccaccacccaagtcataattga 740
Query: 539 agtattatctgtagccagcagaatgagaaacatactgt 576
||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtattatctgtagccagcagaatgagaaacatactgt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 978
Length adjustment: 10
Effective length of query: 566
Effective length of database: 968
Effective search space: 547888
Effective search space used: 547888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_o19.g1 MSMg01no348_o19.g1 CHROMAT_FILE:
MSMg01no348_o19.g1 PHD_FILE: MSMg01no348_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:23 2005
(491 letters)
>mm_chr2_22538127_22539015
Length = 889
Score = 851 bits (440), Expect = 0.0
Identities = 467/484 (96%), Gaps = 14/484 (2%)
Strand = Plus / Minus
Query: 20 aagctgactccctaaccttcatctcaggggttgacctgctcctgccatttgatccactcc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 aagctgactccctaaccttcatctcaggggttgacctgctcctgccatttgatccactcc 830
Query: 80 tggtatttttaaagttactttctaagaaccaagggccacctcatccaggagcagagactt 139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 829 tggtatttttaaagttactttctaagaacgaagggccacctcatccaggagcagagactt 770
Query: 140 caggaattggtgcagcgtgagcttatgtaagtacagctaatgatcatcacttaacgaaaa 199
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 caggaattggtgcagtgtgagcttatgtaagtacagctaatgatcatcacttaacgaaaa 710
Query: 200 cacagaagaaaaac------------aaaaaaaaaaacatggtgtttgagagaagagaga 247
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 709 cacagaagaaaaacaaaaaaaaaaaaaaaaaaaaaaacatggtgtttgagagaagagaga 650
Query: 248 gcttctactctatgtagagataagtctttcttaatttactatttgacattgtcaactatt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gcttctactctatgtagagataagtctttcttaatttactatttgacattgtcaactatt 590
Query: 308 attttgcaacttccattcatcagtaaaataaacctacaaattttgaaaaggctgatttag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 attttgcaacttccattcatcagtaaaataaacctacaaattttgaaaaggctgatttag 530
Query: 368 aacccactacaatatatgaccttgatgtttcctcctccatattaaagtgttgtgaccaaa 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aacccactacaatatatgaccttgatgtttcctcctccatattaaagtgttgtgaccaaa 470
Query: 428 tcttatggtgaggaatgagagctgcttatatgtcttcagcagactcttaacttttgcttt 487
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 469 tcttatggtgaggagtgagagctgcttat--gtcttcagcagactcttaacttttgcttt 412
Query: 488 gttt 491
||||
Sbjct: 411 gttt 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 889
Length adjustment: 10
Effective length of query: 481
Effective length of database: 879
Effective search space: 422799
Effective search space used: 422799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
