Query= MSMg01no349_c21.b1 MSMg01no349_c21.b1 CHROMAT_FILE:
MSMg01no349_c21.b1 PHD_FILE: MSMg01no349_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:43 2005
(576 letters)
>mm_chr2_33006532_33007510
Length = 979
Score = 1079 bits (558), Expect = 0.0
Identities = 570/576 (98%), Gaps = 5/576 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcacaaatctctccccaaccctcttcccagacagacattgccaggtggttgga 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattcatcacaaatc-ctccccaaccctcttcccagacagacattgccaggtggttgga 721
Query: 65 agtggacagtgggggtgggcagtggtgagcagtagcaggcctcgagagagtgagtccctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 agtggacagtgggggtgggcagtggtgagcagtagcaggcctcgagagagtgagtccctt 661
Query: 125 taatggaagagaggaaggggtggtacagctctctctacaatagtgggttgtcttctatct 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 taatggaagagaggaaggggtggtacagctctctctacaatagtgggttgtcttctatcc 601
Query: 185 ctgcagggagttgggacacaagagttcacccaacacacagtggttgtccagtggagtacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctgcagggagttgggacacaagagttcacccaacacacagtggttgtccagtggagtacc 541
Query: 245 ctgtatcagctgcaggttcaggcagcttcttgagagttggtagttaacaggcatgaaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctgtatcagctgcaggttcaggcagcttcttgagagttggtagttaacaggcatgaaaag 481
Query: 305 aactctggtgagcctttgtgatggtcctggggcgtgaggatacaaagtagattctaggtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aactctggtgagcctttgtgatggtcctggggcgtgaggatacaaagtagattctaggtc 421
Query: 365 atgacctggggttggaagggtggcctgcgaatgctcagagtttctgggggccttctacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgacctggggttggaagggtggcctgcgaatgctcagagtttctgggggccttctacag 361
Query: 425 gagagggtt----ctccacattatgttctgctagcttgagaccaggaagtgtaatgtcag 480
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gagagggttctccctccacattatgttctgctagcttgagaccaggaagtgtaatgtcag 301
Query: 481 aggcctctgagttccttggctgtgcattagagagacacatgatgaacactcagcccaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aggcctctgagttccttggctgtgcattagagagacacatgatgaacactcagcccaagt 241
Query: 541 atggagctgctacaggagaactgggtgtggactctt 576
||||||||||||||||||||||||||||||||||||
Sbjct: 240 atggagctgctacaggagaactgggtgtggactctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 979
Length adjustment: 10
Effective length of query: 566
Effective length of database: 969
Effective search space: 548454
Effective search space used: 548454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_c21.g1 MSMg01no349_c21.g1 CHROMAT_FILE:
MSMg01no349_c21.g1 PHD_FILE: MSMg01no349_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:43 2005
(462 letters)
>mm_chr2_32874668_32875529
Length = 862
Score = 872 bits (451), Expect = 0.0
Identities = 460/463 (99%), Gaps = 1/463 (0%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggctggcctcaaattcagagacctgcctgcctgcctctgcctcccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 actctgtagaccaggctggcctcaaattcagagacctgcctgcctgcctctgcctcccaa 259
Query: 61 atgctgggtttcaaggtgtacatcaccactccctgtagctgtggagtctt-gagtatttt 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 atgctgggtttcaaggtgtacatcaccactccctgtagctgtggagtctttgagtatttt 319
Query: 120 tgttctacctttctggggcttcagtttctaccctacacaatgggtacgatcttattttta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgttctacctttctggggcttcagtttctaccctacacaatgggtacgatcttattttta 379
Query: 180 cagagggatgctgttattcaagtgagataatgcacacacacagtacagtgctaggcacat 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagaggggtgctgttattcaagtgagataatgcacacacacagtacagtgctaggcacat 439
Query: 240 tggactgggtaagtagtcaccttagttgtctcatacagagggccagtgaggtctgttaac 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgaactgggtaagtagtcaccttagttgtctcatacagagggccagtgaggtctgttaac 499
Query: 300 agactgaaaagcagaacttgttgggaacaaggcattccctagatacattctgtgtgctgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agactgaaaagcagaacttgttgggaacaaggcattccctagatacattctgtgtgctgg 559
Query: 360 ggccaagctgggcttgtatattacacggggtctcttaggggtttttgaagtgtgcgtgcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggccaagctgggcttgtatattacacggggtctcttaggggtttttgaagtgtgcgtgcc 619
Query: 420 aagttgttttctttttctttcttaaaggttttcgctgggcagt 462
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagttgttttctttttctttcttaaaggttttcgctgggcagt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
