Query= MSMg01no349_j03.b1 MSMg01no349_j03.b1 CHROMAT_FILE:
MSMg01no349_j03.b1 PHD_FILE: MSMg01no349_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:13 2005
(544 letters)
>mm_chr2_91750186_91751127
Length = 942
Score = 1017 bits (526), Expect = 0.0
Identities = 536/540 (99%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgaccacttctctgatacctttcaccttttatttctcacttttcccaatggat 64
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaccacttct--gatacctttcaccttttatttctcacttttcccaatggat 262
Query: 65 catcagggccttaaactctggcatcgagtactactgggaccagctaagtgaaacagtctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catcagggccttaaactctggcatcgagtactactgggaccagctaagtgaaacagtctt 322
Query: 125 cactgtccactcaagtagcaggagcagcgagcggcctgggtaagctaaagtcggaaagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactgtccactcaagtagcaggagcagcgagcggcctgggtaagctaaagtcggaaagtc 382
Query: 185 ctgtgtttgagggtctccggatgttagctcaaccatagcagcctttccttgatctgttac 244
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgtgtttgagggtctctggatgtttgctcaaccatagcagcctttccttgatctgttac 442
Query: 245 ctgtcttaggcttttacgtacagtcaaaagaagacagagactaaagagattgcttggtgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgtcttaggcttttacgtacagtcaaaagaagacagagactaaagagattgcttggtgc 502
Query: 305 ttaggagtacatactgcttttataggacctgaatttagttcccagccctatatcaggcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttaggagtacatactgcttttataggacctgaatttagttcccagccctatatcaggcaa 562
Query: 365 cttacaaccacttgcaactccaggtctagggatgcctgatgcctctggtctctgtgggca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttacaaccacttgcaactccaggtctagggatgcctgatgcctctggtctctgtgggca 622
Query: 425 ctcatatctgcattcatatcctcatacccatacacaaatgtatgtcacgtaattgcaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctcatatctgcattcatatcctcatacccatacacaaatgtatgtcacgtaattgcaaaa 682
Query: 485 gaagacaaaacccttactcttggagtcttattgtagaacacatgccttctctaattctgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaagacaaaacccttactcttggagtcttattgtagaacacatgccttctctaattctgg 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 942
Length adjustment: 10
Effective length of query: 534
Effective length of database: 932
Effective search space: 497688
Effective search space used: 497688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_j03.g1 MSMg01no349_j03.g1 CHROMAT_FILE:
MSMg01no349_j03.g1 PHD_FILE: MSMg01no349_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:13 2005
(552 letters)
>mm_chr2_91907261_91908212
Length = 952
Score = 1021 bits (528), Expect = 0.0
Identities = 539/544 (99%), Gaps = 3/544 (0%)
Strand = Plus / Minus
Query: 12 ggtctacagagtgagttccaggacagccagggatacacagagaaaccctgtctc---aaa 68
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 952 ggtctacagagtgagttccaggacagccagggatacacagagaaaccctgtctcaaaaaa 893
Query: 69 gaaaaaaatctggaagcaacataagtgtttaatattagacattaagtagaggatggtttt 128
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 892 aaaaaaaatctggaagcaacataagtgtctaatattagacattaagtagaggatggtttt 833
Query: 129 cctcaaagcctgggagtgtgctgccattaaaaaccatctcccagaagtgcactgttgaca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cctcaaagcctgggagtgtgctgccattaaaaaccatctcccagaagtgcactgttgaca 773
Query: 189 ctctccaacgttctcagtatgcactgggaggggaaagcaggtttcaaaacagtgctatgc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ctctccaacgttctcagtatgcactgggaggggaaagcaggtttcaaaacagtgctatgc 713
Query: 249 acagagcgatcctgttttgtgataaaaatacaaatgtttatgtatgcagagaaagatctg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 acagagcgatcctgttttgtgataaaaatacaaatgtttatgtatgcagagaaagatctg 653
Query: 309 gaaggacccagtgactgtttctgggtgggtggaatttgcatgtttcttttcgttccttgt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaaggacccagtgactgtttctgggtgggtggaatttgcatgtttcttttcgttccttgt 593
Query: 369 actttatatgtgatttttttttctataatgagtaaaaattacttttgtagtaaggaaaaa 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 actttatatgtgatttttttttctataatgagtaaaaattacttttgtagtaaggaaaaa 533
Query: 429 aattgtaactaccaaaaattgtttttctgattgtaatgcattttcgttgtggaaaattca 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aattgtaactaccaaaaattgtttttctgattgtaatgcattttcgttgtggaaaattca 473
Query: 489 aaaagcctcaaaaagtataaaaaaaataaaaataaaagataattatgcatctcattttac 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaaagcctcaaaaagtataaaaaaaataaaaataaaagataattatgcatctcattttac 413
Query: 549 ctag 552
||||
Sbjct: 412 ctag 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
