XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACTCGTTTTAAACCTACTTGTTTTTCAGTTGCCTGGTTTCATCACTTTTT
AAAGATTTATCATGAATTCTTGAAGATCATGCAATTAATCTTCCCTGGAC
TCATCAAATTAGCCTGAAAATGATCTAACAAGTCTTTAAATTGAAAGGCA
ACCTCAGTTCTTGTTCTCTTGTTATCTTACTCTCTCTTGCTCTTCCTGTG
TTTCTGCTCTGTCCCCTTGCCCCTCTCCCATTCCCTTCCCCCCTCTCTTC
ATGCACTCATGACTCAACTCCTTCTCTTCTTCCTCTCTTCTCCTCTCTTC
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC
TCTTCTCTTCTCTTCTCTTCTCTTCTTCTCCCCTCCCCTCTCCCTTCCTT
TTTCTCCTCTTTTCCTTCCTCTTCACTTTTTCCTCTCCCTGGCCTTCCCT
GCCCCACTGGCCTCTTGAACCTTATTCCCCAAGTACAGAAAAAATCCCGG
GTGGTCCCCAAAAAAAAAAAAAAAGAAAATTTTAAAGCCCCCAAAAAAAA
TCCCATTCCCTTTGGCATAACACCCCCATCCCTATTATGTGGGCACCCCT
TCTCTCCTATAAAAAAAAAAGGAGGTTTTCTCCCCGGTTTTATTAAAAAT
T

TACACTAGTCTTCCCCGCCAGCTNCCTNNNNNNNNNNCGGGCTCCNTTNC
TCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCNGGAATTCTTTTTGTAATGTTAAAAG
AATAGCNTGCATATGAAATCAGAAAATGGGCCTAGTCCTGCCANTCAGTG
GGAAAAGAGAAGGCCCCCCATTTAANTTTGGTGCAAAACTTTTATTATGG
CCCTCAGGAACAGGGGGGAAAGGGACCAGGGGCCCAAAAAAAAGGGGGGG
AAAAGGGGGTAAAAGGGGGGGGGGAAAAAATTTTTTTCTCTTCTTAATAC
ACTTCCCTCCTTCCCCCTTCTCCTTTTCTTCTCCTTTCAACTTTTCCCCC
CCCTCTTTTCCCCCCCTTTCTTTCTCCCGTTTACTCTCCCCCCCCTCCCT
TCTATCCTTTTTTTTTTTTTTCCTTCTCTCCTTTCCCCCCCTTCTCTCCC
CCCTTTCTTTCTTTTCTTCTCCACTTTCCCTTCCCTTCCTTCCCTCTCTT
TTTCCCCTCTCACGTTTTTTCCCTCCCTCTGTTTTTTCCCCTCTTCTATT
TTTTCCCCCTCTTCTCCCGCTATCCTCCTCCN

Query= MSMg01no349_j04.b1 MSMg01no349_j04.b1 CHROMAT_FILE:
MSMg01no349_j04.b1 PHD_FILE: MSMg01no349_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:13 2005
         (395 letters)



>mm_chr2_47081949_47082744
          Length = 796

 Score =  685 bits (354), Expect = 0.0
 Identities = 366/370 (98%), Gaps = 1/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccactcgtttta-aacctacttgtttttcagttgcctggtttcatcacttttta 62
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggaattccactcgttttacaacctacttgtttttcagttgcctggtttcatcacttttta 311

                                                                       
Query: 63  aagatttatcatgaattcttgaagatcatgcaattaatcttccctggactcatcaaatta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagatttatcatgaattcttgaagatcatgcaattaatcttccctggactcatcaaatta 251

                                                                       
Query: 123 gcctgaaaatgatctaacaagtctttaaattgaaaggcaacctcagttcttgttctcttg 182
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcctgaaaataatctaacaagtctttaaattgaaaggcaacctcagttcttgttctcttg 191

                                                                       
Query: 183 ttatcttactctctcttgctcttcctgtgtttctgctctgtccccttgcccctctcccat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttatcttactctctcttgctcttcctgtgtttctgctctgtccccttgcccctctcccat 131

                                                                       
Query: 243 tcccttcccccctctcttcatgcactcatgactcaactccttctcttcttcctctcttct 302
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 130 tcccttcccccctctcttcatgcactcatggctcaactccttctcttcttcctctcttct 71

                                                                       
Query: 303 cctctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttct 362
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  cttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttct 11

                     
Query: 363 cttctcttct 372
           ||||||||||
Sbjct: 10  cttctcttct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 796
Length adjustment: 9
Effective length of query: 386
Effective length of database: 787
Effective search space:   303782
Effective search space used:   303782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)