Query= MSMg01no349_n16.b1 MSMg01no349_n16.b1 CHROMAT_FILE:
MSMg01no349_n16.b1 PHD_FILE: MSMg01no349_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:35 2005
(604 letters)
>mm_chr2_11832691_11833695
Length = 1005
Score = 710 bits (367), Expect = 0.0
Identities = 414/449 (92%), Gaps = 31/449 (6%)
Strand = Plus / Minus
Query: 1 acatgaaatttacaaactgcattcgtcttttctatatatgtcctaccaattccagtccac 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 449 acatgaaatttacaaactgcatttgtcttttctatatatgtcctaccaattccagtccac 390
Query: 61 ataaattagaaaacacttaaacttctcatgtgtcttcagtgaagtggaaatagttggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ataaattagaaaacacttaaacttctcatgtgtcttcagtgaagtggaaatagttggagg 330
Query: 121 agaaccagagtccttcttc-ttttttttagcctatgtttctccagtggttttcacactaa 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agaaccagagtccttcttctttttttttagcctatgtttctccagtggttttcacactaa 270
Query: 180 aatgctcaatctacacaacctattaatgcacacgttattgaaataaagataggttcaatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 269 aatgctcaatctacacaacctattaatgcacacgttattgaaataaagataggctcaatg 210
Query: 240 accaatagggtgtgtgtgtgtgtgtgt------------------------------gcg 269
||||||||||||||||||||||||||| |||
Sbjct: 209 accaatagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcg 150
Query: 270 cgcacccatgtgtctatgtgtgcatttgtgtgcaagagtgtgtttgcatgtgtgggggtg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cgcacccatgtgtctatgtgtgcatttgtgtgcaagagtgtgtttgcatgtgtgggggtg 90
Query: 330 cgcatgattgagtgtctccatgcatgcaaatgtgtgtgtgtgcatgtgtgcgtgcgtgct 389
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 cacctgattgagtgtctccatgcatgcaaatgtgtgtgtgtgcatgtgtgcgtgcgtgct 30
Query: 390 tgtgtgcatgaagacagacttgggttttg 418
|||||||||||||||||||||||||||||
Sbjct: 29 tgtgtgcatgaagacagacttgggttttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space: 591030
Effective search space used: 591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_n16.g1 MSMg01no349_n16.g1 CHROMAT_FILE:
MSMg01no349_n16.g1 PHD_FILE: MSMg01no349_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:36 2005
(574 letters)
>mm_chr2_11624026_11624999
Length = 974
Score = 1004 bits (519), Expect = 0.0
Identities = 558/571 (97%), Gaps = 2/571 (0%)
Strand = Plus / Plus
Query: 2 tcctgtcagaatcacaagatcctgagaacaataatggggaaaactctacttcattgacta 61
|||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 202 tcctgtaagaatcacaagatcctgagaacaataacgggaaaaactctacttcattgacta 261
Query: 62 tagaaagaagtctttttggcagggtggaatgagataggtgagggtggctttgaactctag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tagaaagaagtctttttggcagggtggaatgagataggtgagggtggctttgaactctag 321
Query: 122 attctcctgcctccattcccaagtgttaggactgcaggcatgtaccactatgctcagctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attctcctgcctccattcccaagtgttaggactgcaggcatgtaccactatgctcagctc 381
Query: 182 gggagtcattatatttttcttatgtgttcaataattgtattagttttattggagatgctt 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 382 aggagtcattatatttttcttatgtgttcaataattgtattagttttattggagatgttt 441
Query: 242 gatgttactaagacatattgttaattattttcattttaatgtaccaccc-ctacatacat 300
||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||
Sbjct: 442 gatgttactaagacatattgttaattattttcattttaatgtatcacccgc-acgtacat 500
Query: 301 gcttgaatatttagggacaacataagatggcattcatgttggcctcagttggagacattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttgaatatttagggacaacataagatggcattcatgttggcctcagttggagacattg 560
Query: 361 ttctgtccctgcttggataaaatagtagacttcctgtggtcaccatctggatggatgatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgtccctgcttggataaaatagtagacttcctgtggtcaccatctggatggatgatg 620
Query: 421 agtaggtgtgtttaactgtcttgttttgtttgtcttcttttatttttgaggcagggtgtc 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgggtgtgtttaactgtcttgttttgtttgtcttcttttatttttgaggcagggtgtc 680
Query: 481 atgcagtccaggctggcctccaattctctgtacctgaagctagccttgaactcctgattc 540
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct: 681 atgcagtccaggctggcctccaattctctgaatctgaagctaaccttgaactcctgattc 740
Query: 541 tctcatctctagctcccagtgctaagctcat 571
|||||||||||||||||||||||||||||||
Sbjct: 741 tctcatctctagctcccagtgctaagctcat 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
