BAC Information

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BAC

Clone NameMSMg01-349P18
Chromosome2 (Build37)
Map Location 65,367,735 - 65,368,310
singlet/doubletsinglet
Overlap geneScn3a
Upstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
Downstream geneScn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349P18.T7 (MSMg01no349_p18.b1)MSMg01-349P18.TJ (MSMg01no349_p18.g1)
ACCAG461708AG461709
length1,053786
length of high quality
(start - end)
---576 (69 - 644)
definitionCHROMAT_FILE: MSMg01no349_p18.b1 PHD_FILE: MSMg01no349_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:46 2005CHROMAT_FILE: MSMg01no349_p18.g1 PHD_FILE: MSMg01no349_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCCTATTTCCCCCCCCCCGCCTATCCTCCCCCTGCGGGTGTCCCCTGC
CGTCCCTCCCGCGTCGCTCCCCTCGTCGCGCGTTGCTGCCGCGCGACTGT
CTTCTAGACAGCACACCAGCGCGCCCGCGACATCGCTCTGGGCGTGCGTC
GAACACAGCCTCCCCGTTGGTATCGAGCCACGCGTTACGCGCTCTTCCGA
CCCTGGACCAGTTCCGCAGTTACTAGCCCTCGCGTCGCGCACGCACCTTC
AAACGCGACGGCGCGAGTAGCTCTGCGCCGGCCTGATAGGCGCCCTTCGC
TATGCATTCATCCGCCCGCTACATACGCGCTTACTCTCACCGCCTCCGCA
TACGCCGATATAATAGGCGCCGCGATCCGCGCTACCATTGTTTACTTCTC
GTTTTCGTCTTCCGACTAATCTCGCCGGTCTCTATTCCCCGCCTATTACC
CTCCCCCGCCCCTTATTCAGACCATTCGCCGTCACTCCCCCATGCTGCCC
ATCTAGAATCTTTCCTGATACTCCCCGCCCTCATTCTCGTAGTTACCCGC
CGTCGCTTCTACCCGTCGTCGTTTATGTCCGCGCTTTTTACCTCGCTCCG
TACGCCGTCGTTTCACTCTATACTGCTGTCCTGTCATTGCCCACTTGCCC
GCACCTTCTATGCCACCGTGTTCCATTTCCCCCCCCCCTTCTCCGCGTCT
TAAGCTGATTCAGATATGATTCCGCCTGAGTTCTCCTCACTTCTCTACTC
CTCGTCCCTTCCTCCCCTTTAGTGCAACTAACGTCAATCACCCCCGATGT
GCTTTGTAACCCCGTGCCGACGACCCTATACCATCATGTATCTCGTTTTT
GCGCTCACACCCCTTTCCGCGCTTCACCCGCCATCGCACATTTGCCGCAC
CTACTTTCCCCCGTACCTCTTCCCCCGCCCACGATTCATTCTCGTCTCGA
CCCGTCGGCCTCGCTCGTCTCGACATCTCCTCGCACGACTACCACTCACA
CTCCTCTTTGTCTATCTTCACGTCCACCTGTCTACTACCTCCTCACACTA
TTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTGTAAACAGATACAGAAAGCAGCCTCACA
GTGATGTCACTCAGTTCTTGATGGTTTATAGCACTCTCTGGAGGGGATGT
TTTGCGCTAACAAGGTAGTATCATTAGCTGTTCTGGTAGGGATATTGTTT
TTGATGTTTCAATACAGATTTCACTGCAGAGAAGCTCATGTGACAAATAC
TTTTATTTTAAAATATAAACACCTTCTAATATCAAGCCTGAGAATGAGCG
AGTTCATATGGATTTCAAAGGATTACCTCCTGCTTCCTGTGTCCACAAGA
TAATGTATTTTACTTTATATAAGCCTGTGAGGTAGACTATAGAAAATGTC
CACTACTGAACACCATTTTAAAGGTATTTTGTCATTACTCCAGGGTCTAC
TGCAATCTATGCTTATTCTTCCCATAACATGAATATTGTACTATTATAGT
TTGCACCTGTATATGCCATACTGGGAACAAAACTTGTCCCCTTGAACATG
CTGGGCTAGTTTTGTACCACTGAGTCACATCACAGACCCATAAAGAATTT
TAAGGTTGTTGACTTTTTGATATATTATTATCCAAGTACAGAGACACATA
GCTGTTTTGTGAATGTTTCCAGCAGGAAAATAGAAAAGAACGAAGAGAAC
TAGGGAGAAATGTAGGACTTGGTGGAAAGTGGTATATGAAGAACTTTTTA
ATTTTTTTCCTCCTTTTTTCCCTCCTTCCCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_p18.g1 MSMg01no349_p18.g1 CHROMAT_FILE:
MSMg01no349_p18.g1 PHD_FILE: MSMg01no349_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:46 2005
         (576 letters)



>mm_chr2_65367535_65368510
          Length = 976

 Score = 1006 bits (520), Expect = 0.0
 Identities = 562/576 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgtaaacagatacagaaagcagcctcacagtgatgtcactcagttcttgatggttta 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgtaaatagatacagaaagcagcctcacagtgatgtcactcagttcttgatggttta 260

                                                                       
Query: 61  tagcactctctggaggggatgttttgcgctaacaaggtagtatcattagctgttctggta 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcactctctgaaggggatgttttgcgctaacaaggtagtatcattagctgttctggta 320

                                                                       
Query: 121 gggatattgtttttgatgtttcaatacagatttcactgcagagaagctcatgtgacaaat 180
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 321 gggatattgtttttgatgtttcaatacagatttcactgcacagaagttcatgtgacaaat 380

                                                                       
Query: 181 acttttattttaaaatataaacaccttctaatatcaagcctgagaatgagcgagttcata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 acttttattttaaaatataaacaccttctaatatcaagcctgagaatgagagagttcata 440

                                                                       
Query: 241 tggatttcaaaggattacctcctgcttcctgtgtccacaagataatgtattttactttat 300
           |||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tggatttcaaagaattatctcctgtttcctgtgtccacaagataatgtattttactttat 500

                                                                       
Query: 301 ataagcctgtgaggtagactatagaaaatgtccactactgaacaccattttaaaggtatt 360
           |||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||
Sbjct: 501 ataagcctgtaaggtagactatagaaaatgtgtactactgaacactattttaaaggtatt 560

                                                                       
Query: 361 ttgtcattactccagggtctactgcaatctatgcttattcttcccataacatgaatattg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ttgtcattactccagggtctactgcaatctatgcttattcttcccataacatgaatgttg 620

                                                                       
Query: 421 tactattatagtttgcacctgtatatgccatactgggaacaaaacttgtccccttgaaca 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactatgatagtttgcacctgtatatgccatactgggaacaaaacttgtccccttgaaca 680

                                                                       
Query: 481 tgctgggctagttttgtaccactgagtcacatcacagacccataaagaattttaaggttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgggctagttttgtaccactgagtcacatcacagacccataaagaattttaaggttg 740

                                               
Query: 541 ttgactttttgatatattattatccaagtacagaga 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgactttttgatatattattatccaagtacagaga 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)