BAC Information

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BAC

Clone NameMSMg01-350A08
Chromosome2 (Build37)
Map Location 37,314,487 - 37,314,928
singlet/doubletsinglet
Overlap geneRabgap1
Upstream geneOlfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26
Downstream geneGpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350A08.T7 (MSMg01no350_a08.b1)MSMg01-350A08.TJ (MSMg01no350_a08.g1)
ACCAG461736AG461737
length755759
length of high quality
(start - end)
464 (78 - 541)442 (85 - 526)
definitionCHROMAT_FILE: MSMg01no350_a08.b1 PHD_FILE: MSMg01no350_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:49 2005CHROMAT_FILE: MSMg01no350_a08.g1 PHD_FILE: MSMg01no350_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAACCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAG
GATCCGCGGAATTCTTCATCTGTTTCAGAGCTACTAAGAGCTGGCTCCTT
GAGCTCATCTAGTGATGAGTATAGGCTCCTTCTCCTAGAAACCTCTGCTG
ATTGATCTTTTTTCTTTTCTTTTTCCTTCTCCTTCCTTCCAATCTCTCCC
CAGGTATTTTTCCCTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGA
AAGGCCTGTATACTTATTTTGTGCACCATGTTTCCTCTTTGCTCCTACTC
TCTCTCCCAGCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAAAATT
TTCAGCCCTGCCTTAACCACTTGATAACAGGTGAAAAGGAACAAAAGGGC
TCCTAACACTGGAGAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTT
CCCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGG
CCAGACGTGCCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTC
TTGAATTTCGTTAGAAAGTTCAAGGNCAGACATACCTTGTAAAGCTATTT
CCCACTTTACTTCTGATAGACTGTCTTGAAATTCGTTAGAAAGTTCAAGC
CCCGACGGAACTTTGTAAAGCTGTACTTACAGGGATCCCTGCCCCCCAGC
TGAGGAGATCCGAATCCCCCCACTTGAATCCTTTCCCACATCCGTTGTGG
CGGAA
NNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGACCATAGACA
CTCATCACTTCCTTCTTACTCGCCACCATTTTTTGTTGCTCAGTAAGTAC
TATGTTGTTCAATAAGCACCTAGGTGTTCTGCTCTTTTCCGAGCTGTATC
TCACTCCTTGGTATCCCTATCTCCATTCTTTATGTATTCCAGTTCAGGAA
CTACAACAGAAAGTAACAAGACAAGACTCAAAAGATACCATAGCAGGCCA
ATTCCCACATGATTTGTATCTTTTAAAGTAAAATAAGTACTGGGAGATGG
GTCAGCAGCAAAAGTCACTATTGCCATGACAATTACAAGGATCTGAATTC
AGATCCTTATGACCCATTTTAAAGAACAGAAGCCAGGCAATGTGGCATGT
GCCCACAACCCCAACACCAGGGTGTGGATGAAGAATACTGAAGCTCACTG
ACCAGGTAACTTAACTGATGAGCTTCAGATTCAGCAAGAGAACCTACCTT
AAAACATGAATGCCAGAAAGCAAATGAGGACAACCCCCAATGTCCAACTT
CAGCTTTCCATAGGACAATGTGCACCTCATACCCCCCCAAACCAGTAAAG
GCTTATGGTCGGGGTTACTTAACGAAAACCTGGGTTAAGTAAAGGGGAGG
CTTTGTGTTTTGTTCCTTCACACCTTAATTTATTAATCCTCTTATACCTG
GGATACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_a08.g1 MSMg01no350_a08.g1 CHROMAT_FILE:
MSMg01no350_a08.g1 PHD_FILE: MSMg01no350_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:49 2005
         (442 letters)



>mm_chr2_37314472_37315313
          Length = 842

 Score =  839 bits (434), Expect = 0.0
 Identities = 440/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggaccatagacactcatcacttccttcttactcgccaccattttttgttgctcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttttggaccatagacactcatcacttccttcttactcgccaccattttttgttgctcagt 398

                                                                       
Query: 61  aagtactatgttgttcaataagcacctaggtgttctgctcttttccgagctgtatctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aagtactatgttgttcaataagcacctaggtgttctgctcttttccgagctgtatctcac 338

                                                                       
Query: 121 tccttggtatccctatctccattctttatgtattccagttcaggaactacaacagaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 337 tccttggtatccctatctccattctttatgtattccagttcagtaactacaacagaaagt 278

                                                                       
Query: 181 aacaagacaagactcaaaagataccatagcaggccaattcccacatgatttgtatctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aacaagacaagactcaaaagataccatagcaggccaattcccacatgatttgtatctttt 218

                                                                       
Query: 241 aaagtaaaataagtactgggagatgggtcagcagcaaaagtcactattgccatgacaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aaagtaaaataagtactgggagatgggtcagcagcaaaagtcactattgccatgacaatt 158

                                                                       
Query: 301 acaaggatctgaattcagatccttatgacccattttaaagaacagaagccaggcaatgtg 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 acaaggatatgaattcagatccttatgacccattttaaagaacagaagccaggcaatgtg 98

                                                                       
Query: 361 gcatgtgcccacaaccccaacaccagggtgtggatgaagaatactgaagctcactgacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gcatgtgcccacaaccccaacaccagggtgtggatgaagaatactgaagctcactgacca 38

                                 
Query: 421 ggtaacttaactgatgagcttc 442
           ||||||||||||||||||||||
Sbjct: 37  ggtaacttaactgatgagcttc 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)