Query= MSMg01no350_f03.b1 MSMg01no350_f03.b1 CHROMAT_FILE:
MSMg01no350_f03.b1 PHD_FILE: MSMg01no350_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:12 2005
(496 letters)
>mm_chr2_12316511_12317406
Length = 896
Score = 884 bits (457), Expect = 0.0
Identities = 489/509 (96%), Gaps = 16/509 (3%)
Strand = Plus / Plus
Query: 4 ggaattctgtgattttcactcaaaattttcctaacattggattctttctgtgaatttgct 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggaattctgtgattttaactcaaaattttcctaacattggattctttctgtgaatttgct 247
Query: 64 atacaaatttctaaaatttgaggaaaatttaaattaaaagttgaaaatcattcatttggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atacaaatttctaaaatttgaggaaaatttaaattaaaagttgaaaatcattcatttggg 307
Query: 124 aatgaaaagtattagtaacattttcttcaaacaaaatatattcagtgagctgggcggtgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatgaaaagtattagtaacattttcttcaaacaaaatatattcagtgagctgggcggtgg 367
Query: 184 tagcgcacacctttgatcccagcacttgggtggcagaggcaggcggatttctgagtgcaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tagcgcacacctttgatcccagcacttgggtggcagaggcaggcggatttctgagtgcaa 427
Query: 244 ggccaacctggtctacaaagtgagttctaggatagtcagggctacacagagaaacccagt 303
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 428 ggccaatctggtctacaaagtgagttctaggacagtcagggctacacagagaaacccagt 487
Query: 304 cttgaaaaactcaatatatatatatggagagagagaga-a---------------agaga 347
|||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 488 cttgaaaaactcaatatatatatatggagagagagagagagagagagagagagagagaga 547
Query: 348 gagggtgagagagagagagagagagagtataaatttgcctctgaacacaagctgtgaagc 407
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gagggagagagagagagagagagagagtataaatttgcctctgaacacaagctgtgaagc 607
Query: 408 ttcacatcccatgatcgacattttagtacgaggcttattgcacttcctctgtaaaaggtg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttcacatcccatgatcgacattttagtacgaggcttattgcacttcctctgtaaaaggtg 667
Query: 468 aatgactgagcaaaggagtttagattgcc 496
|||||||||||||||||||||||||||||
Sbjct: 668 aatgactgagcaaaggagtttagattgcc 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_f03.g1 MSMg01no350_f03.g1 CHROMAT_FILE:
MSMg01no350_f03.g1 PHD_FILE: MSMg01no350_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:12 2005
(444 letters)
>mm_chr2_12468407_12469250
Length = 844
Score = 843 bits (436), Expect = 0.0
Identities = 442/444 (99%)
Strand = Plus / Minus
Query: 1 agtcagtgaatatttaccaaataactactcagggggagactacctagcaaagagtacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agtcagtgaatatttaccaaataactactcagggggagactacctagcaaagagtacaga 585
Query: 61 cgtgatcatacagacatgtggtcttttgctcctaagatcttattgtattgggtatgtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cgtgatcatacagacatgtggtcttttgctcctaagatcttattgtattgggtatgtcag 525
Query: 121 aggcaactagatgtattgtaccaataactgtgatgtttaatcctgattaccatattaatt 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 524 aggcaactagatgtattgtaccaataactgtgatgtttaatcctgattgccatattaatt 465
Query: 181 gcattgagagatacctataaggttaatagaccacacctgagtgtggcattccagaagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcattgagagatacctataaggttaatagaccacacctgagtgtggcattccagaagcaa 405
Query: 241 tttcctcaggctgcctctgacctatgaaacaggtcaatccatcagtggattctaaatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tttcctcaggctgcctctgacctatgaaacaggtcaatccatcagtggattctaaatttg 345
Query: 301 aatggaatactgggaggaattcttgaaagtggtgcttagtgggaggaagcaggctgctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 344 aatggaatactgggaggaattcttgaaagtggtgcttagtgggaggaagcaggatgctga 285
Query: 361 gacttgccttgaattatgtatcttagtcatagccttttcctgatggtcctcacagtttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gacttgccttgaattatgtatcttagtcatagccttttcctgatggtcctcacagtttta 225
Query: 421 tagcattatgtgatgaaccagcta 444
||||||||||||||||||||||||
Sbjct: 224 tagcattatgtgatgaaccagcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
