BAC Information

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BAC

Clone NameMSMg01-350H10
Chromosome2 (Build37)
Map Location 33,010,316 - 33,182,710
singlet/doubletdoublet
Overlap geneRalgps1, Angptl2
Upstream gene5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
Downstream geneZbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350H10.T7 (MSMg01no350_h10.b1)MSMg01-350H10.TJ (MSMg01no350_h10.g1)
ACCAG462071AG462072
length786802
length of high quality
(start - end)
430 (76 - 505)270 (82 - 351)
definitionCHROMAT_FILE: MSMg01no350_h10.b1 PHD_FILE: MSMg01no350_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:23 2005CHROMAT_FILE: MSMg01no350_h10.g1 PHD_FILE: MSMg01no350_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,010,316 - 33,010,745)(33,182,441 - 33,182,710)
sequence
TTTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGATGTCCGGCGGATGGGAGCGTGCATACTTGGAACAG
ATGGGCTGATGGGAGTCACAACCACGCATGGTAGGGTTCAAAAATGTCCG
AGGCCTGAGGCTGCACTGGTGCAATACTCTCAGGTATCACTAGATGGAGC
CACATGCCCATCTCAAGACTTCCAACAGGCCTCAGGCTTAGAGGTCCAGG
ATTCATTGCAGGCCTACCAGGCTCCCAGGTTTCCTCTAGCTGGCTTGGAC
CAAGTGCTCTGAGTGTCAACTGACAAAAGAAGGGAGGGAGCAGGTAGAGA
GCCCTTTCTAAGCCTGTGTATACATCCACAAATGCATGAGTGTATAACTG
AATTATGAATGTGTCCACCTGCGCGCACGTGTAAGTGTGAGATTAGTGTT
TACTATGTGCACACTGAGGTGTGACCATGTAATTATGCATATGTCACGAA
TGGTTGCGGAGGGGCCCCTGACTTCCCGCTCCCTGGGTCCCGAGAGGGCC
TTGTTGAGGCCCACTTCCCTTTTCCGCCCGCAAAAATTTCTTCCTTAAAC
CTCGGAATTTCCATACTGGCCTGGAAAAAGGACATTAATTTCTTCGTCCC
GGTTCCCTCTCTCACCTAAGTCGCATGGTTTATTCTTTATTCCCTCCCCT
TTTATTTTTCCCTCCCTTCTCTTATCTATATTCTTCCTCTATGCTCGATT
CCTCCCAGTACCTATCTCTCCCCCGTTTTCTCTTCC
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACCATGTGTATTGCAAG
GTCTGAATGTGTCCCACAAGGTAGGTTCAGTCAACCAAATGTCAGAAAGG
CCCATGGCCCTCCTCCCTGTCTCAGAGGCATGTGGTGACTGACACCTGGT
TCCCGTGTGATACACCGAGATGGGTAAGTTACGAAATGACCTTGGCCCTG
GTCAAATGAGCATCTGCTTTTTGGTCCCATCAGTGGCATCAGAGCCTGTG
TGCTGCTGTGGGAGTGCCACGCCCTTTGCTTTTCAGTTTGTGCAAGAGGG
CAGTGGAATGGTGTGTTCATGCCACACTCCTGCAAGTTCACAGAGCTGCC
TCTTAGTTTCTGAGATTCTGCTCAGGGTCTTAGATTGTTTTGTGGACTCA
TTCTCTTGCGAATAGTTCTCTACCTTGAAATTTTTGGGTAGGTACCCCCT
TCTTAATTGAATCTCTATTTTTTTTTACATTTTTAATTATCACTTTCTTT
TTTTTTGTATCTTTCTATATCAATGTTTTTCATCCTTTTTAAATCTTTTA
TCACACTTTTTTTTATCTCTACCTATATATTTTTTTTTATTATTATTATT
CTCATATATTTATATTTTTCAATATTTAATCTCTTACCTTTCTCAATTTT
ATCTCCTTCTATCTCTATCTTTTCCTTTTATTTCACTTTTTTTCTTCTTA
TTATTACTTCTATTATTTTTTTTTTTTTTTTTTACCCTCTCTATCACTCC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_h10.b1 MSMg01no350_h10.b1 CHROMAT_FILE:
MSMg01no350_h10.b1 PHD_FILE: MSMg01no350_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:23 2005
         (430 letters)



>mm_chr2_33010116_33010945
          Length = 830

 Score =  801 bits (414), Expect = 0.0
 Identities = 426/430 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggagcgtgcatacttggaacagatgggctgatgggagtcacaaccacgcatggtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggagcgtgcatacttggaacagatgggctgatgggagtcacaaccacgcatggtagg 260

                                                                       
Query: 61  gttcaaaaatgtccgaggcctgaggctgcactggtgcaatactctcaggtatcactagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcaaaaatgtccgaggcctgaggctgcactggtgcaatactctcaggtatcactagat 320

                                                                       
Query: 121 ggagccacatgcccatctcaagacttccaacaggcctcaggcttagaggtccaggattca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ggagccacatgcccatctcaagacttccaacaggcctcaggcttagaggttcaggattca 380

                                                                       
Query: 181 ttgcaggcctaccaggctcccaggtttcctctagctggcttggaccaagtgctctgagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcaggcctaccaggctcccaggtttcctctagctggcttggaccaagtgctctgagtg 440

                                                                       
Query: 241 tcaactgacaaaagaagggagggagcaggtagagagccctttctaagcctgtgtatacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaactgacaaaagaagggagggagcaggtagagagccctttctaagcctgtgtatacat 500

                                                                       
Query: 301 ccacaaatgcatgagtgtataactgaattatgaatgtgtccacctgcgcgcacgtgtaag 360
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 501 ccacaaatgcatgagtgtataactgaattatgaatgtgtccacctgtgtgcacgtgtaag 560

                                                                       
Query: 361 tgtgagattagtgtttactatgtgcacactgaggtgtgaccatgtaattatgcatatgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgagattagtgtttactatgtgcacactgaggtgtgaccatgtaattatgcatatgtc 620

                     
Query: 421 acgaatggtt 430
           | ||||||||
Sbjct: 621 atgaatggtt 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no350_h10.g1 MSMg01no350_h10.g1 CHROMAT_FILE:
MSMg01no350_h10.g1 PHD_FILE: MSMg01no350_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:24 2005
         (270 letters)



>mm_chr2_33182241_33182910
          Length = 670

 Score =  507 bits (262), Expect = e-148
 Identities = 268/270 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaccatgtgtattgcaaggtctgaatgtgtcccacaaggtaggttcagtcaaccaaatg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 470 ctaccatgtgtattgcaaggtctgaatgtgtcccacagggtaggttcagtcaaccaaatg 411

                                                                       
Query: 61  tcagaaaggcccatggccctcctccctgtctcagaggcatgtggtgactgacacctggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcagaaaggcccatggccctcctccctgtctcagaggcatgtggtgactgacacctggtt 351

                                                                       
Query: 121 cccgtgtgatacaccgagatgggtaagttacgaaatgaccttggccctggtcaaatgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cccgtgtgatacaccgagatgggtaagttacgaaatgaccttggccctggtcaaatgagc 291

                                                                       
Query: 181 atctgctttttggtcccatcagtggcatcagagcctgtgtgctgctgtgggagtgccacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 290 atctgctttttggtcccatcagtggcatcagagcctgtgtgctgctgtgggagtgccaca 231

                                         
Query: 241 ccctttgcttttcagtttgtgcaagagggc 270
           ||||||||||||||||||||||||||||||
Sbjct: 230 ccctttgcttttcagtttgtgcaagagggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)