BAC Information

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BAC

Clone NameMSMg01-350I04
Chromosome2 (Build37)
Map Location 144,738,347 - 144,738,930
singlet/doubletsinglet
Overlap genenone
Upstream geneDstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350I04.T7 (MSMg01no350_i04.b1)MSMg01-350I04.TJ (MSMg01no350_i04.g1)
ACCAG462105AG462106
length733804
length of high quality
(start - end)
584 (84 - 667)---
definitionCHROMAT_FILE: MSMg01no350_i04.b1 PHD_FILE: MSMg01no350_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:27 2005CHROMAT_FILE: MSMg01no350_i04.g1 PHD_FILE: MSMg01no350_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGAAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGA
GAATGCGCGGAATTCACCTACTTCACGCCCTGGATTTCTGTTATACACCA
GACTGTTGATAGATGTTGAATAATCTGTAGATGGTTATTAGCAAGATCCA
TGGATTTCCTAAAATTGTAATTTAGCATGACTATGCATGTATATTTTACT
AAGACTGGAGTCCATAGCTTTTATGAGATCTTTTAAGATGCTTTGTATCT
CCAAAGCTATTTGAGGCTCTATAGTGAGTTCCATGAACCTGGGCTTTAAG
GTCTTCAAAGTCAAATGATCACACATAGGATATTTTATATAAAAGCTCTC
TCTAGCATCTGTCTTTGGATGACTGATCCTAAAGTTGACCCTCTAATTCA
AGTGACAATGAGAAAAACTCATGGGTAGTTGTAATGCAAGTGACATCACA
ATATTTGGGACCATGTTTTACCACAAAGTCAACCTTTCCTGGCTCTGGAA
AAGCTTCCTTGCAAACCAAATTCTTTGTATGTGCTAAACAAAAGGAGAGG
AGAAAGTCTCTCCCAGAGAAGAGTCCCCTAGGTGGTCATCCCTGAAATCA
TACATACCCAAGTAACACTATATGGACTGAGATTATTTATAAATATATTT
TATTTTTATATAAATATACATGTATTATGCTTACTTATAAATAAATTTCC
CATTCTTCAAAGGTGACGAATTTTATCCCCCAC
TTCCGCTNNNNNNNTTCTTNTTTTTTCTATGCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTGCGGATTCTTGAC
GTTGATGGCTTCTGATGGAGGGAGATCAGGGTTTTTGTTTTGTTTTGCTT
TTTGAAGCAGGGGATCCTGGACGATCGATTACCTTCCTCTATCTATGACC
AATACCATTTGGAGTCCATGAGTTATTACCCCCCCCAAGAAGGGAGGTTA
AAATCCCAAAAATGGCAATGCGGGCCCGCACCTTGAAAAATCCTCATTTA
AAAACCCGCTTCGAAATCCCCTGATTTTTTTGCCTTTTTTTTCTTCCCAC
TCCCCCCTTAACGTCCCCCTCTCCCCGTTTTCCTTTCCTCCTCCTCTCTT
ACCCCACCCCCCCTATTCCTTTTTCCTCTTTCCCCCCTCCCCCCCCCCCT
GTCTCTCTTTCCCCCACCCCCCTTCTTCCTACTCCCCCACCCCCTCTCCT
TCCTTCCCTTAATACCCATTATCTCTTCCCTCTACCCCCTCCCCTCCTCC
CTCCCCCCCACTCCCTTACCCCCTCTCTTCTCCCCTTCCCCCTCCTCCCC
TCTCCCTCCCCACCATTTTTCCCTATTTCCCCCTCCATTATCTCTTTTAA
TTCGTCTCTTCTTTCCCTCTTTCCTCCTCCCCTCTTGTTACCCTTTATCC
CCATATACTTCTACATCCTTATCTTCTCCCCTTCTTCCTCCTTCCTTCCT
TTCTTTTCTCCACTCCTCCTTCTATTCCCCCTTATTTCCCCCTTCACTTT
CCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_i04.b1 MSMg01no350_i04.b1 CHROMAT_FILE:
MSMg01no350_i04.b1 PHD_FILE: MSMg01no350_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:27 2005
         (584 letters)



>mm_chr2_144738147_144739130
          Length = 984

 Score = 1044 bits (540), Expect = 0.0
 Identities = 573/584 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctgttatacaccagactgttgatagatgttgaataatctgtagatggttattagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctgttatacaccagactgttgatagatgttgaataatctgtagatggttattagca 260

                                                                       
Query: 61  agatccatggatttcctaaaattgtaatttagcatgactatgcatgtatattttactaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatccatggatttcctaaaattgtaatttagcatgactatgcatgtatattttactaag 320

                                                                       
Query: 121 actggagtccatagcttttatgagatcttttaagatgctttgtatctccaaagctatttg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 actggagtccatagcttttatgagatcttttaagatgctttgcatctccaaagctatttg 380

                                                                       
Query: 181 aggctctatagtgagttccatgaacctgggctttaaggtcttcaaagtcaaatgatcaca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aggctctatagtgagttccatgcacctgggctttaaggtcttcaaagtcaagtgatcaca 440

                                                                       
Query: 241 cataggatattttatataaaagctctctctagcatctgtctttggatgactgatcctaaa 300
           ||||||| |   || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataggagacagtagataaaagctctctctagcatctgtctttggatgactgatcctaaa 500

                                                                       
Query: 301 gttgaccctctaattcaagtgacaatgagaaaaactcatgggtagttgtaatgcaagtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgaccctctaattcaagtgacaatgagaaaaactcatgggtagttgtaatgcaagtga 560

                                                                       
Query: 361 catcacaatatttgggaccatgttttaccacaaagtcaacctttcctggctctggaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcacaatatttgggaccatgttttaccacaaagtcaacctttcctggctctggaaaag 620

                                                                       
Query: 421 cttccttgcaaaccaaattctttgtatgtgctaaacaaaaggagaggagaaagtctctcc 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 cttccttgcaaaccaaattctttgtatgtgctaaacaaaaggacaggagaaagtctctcc 680

                                                                       
Query: 481 cagagaagagtcccctaggtggtcatccctgaaatcatacatacccaagtaacactatat 540
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 681 cagagaagagtcccctaggtggtcatccctgaaatcaaacatacacaagtaacactatat 740

                                                       
Query: 541 ggactgagattatttataaatatattttatttttatataaatat 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggactgagattatttataaatatattttatttttatataaatat 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)