Query= MSMg01no350_i17.b1 MSMg01no350_i17.b1 CHROMAT_FILE:
MSMg01no350_i17.b1 PHD_FILE: MSMg01no350_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:30 2005
(244 letters)
>mm_chr2_75489237_75489879
Length = 643
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 ttttttctggacttaagacctccaccatgtattccagcctggccttagactctagctatt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttctggacttaagacctc-accatgtattccagcctggccttagactctagctatt 259
Query: 61 ccctccttactactacagatgggtagcaccatacctagaaacttacgtttcttaatggta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acctccttactactacagatgggtagcaccatacctagaaacttacgtttcttaatggta 319
Query: 121 ttttctgcaagtctattgggtcagtttgggctgtcatttaggaaaagagaagcttctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttctgcaagtctattgggtcagtttgggctgtcatttaggaaaagagaagcttctgct 379
Query: 181 tggtggccatcactgttctcctgcacaaaggcccagggatgtctctagagcgttccagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggtggccatcactgttctcctgcacaaaggcccagggatgtctctagagcgttccagtg 439
Query: 241 tggc 244
||||
Sbjct: 440 tggc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no350_i17.g1 MSMg01no350_i17.g1 CHROMAT_FILE:
MSMg01no350_i17.g1 PHD_FILE: MSMg01no350_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:30 2005
(439 letters)
>mm_chr2_75704487_75705321
Length = 835
Score = 433 bits (224), Expect = e-126
Identities = 346/426 (81%), Gaps = 64/426 (15%)
Strand = Plus / Minus
Query: 1 cagggagtccggttcatgacctgtacaataaccactttctttaagctgcaaagcaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 cagggagtccggttcatgacctgtacaataaccactttctttaagctgcaaaggaaaaat 303
Query: 61 tttaaattttactggcaaaaatggtcccatttcatacagcattcaacacattctattcaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 302 tttaaattttactggcaaaaatggtcccatttcatacagcattcaacacaatctattcaa 243
Query: 121 ctccttctatctgtttctagtatttttgacacattaaaacctgtaaatatatatatatat 180
||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 242 ctcct----tctgtttctagtatttttgacacattaaaacctgtaagta----------- 198
Query: 181 acacatatatatatacatatatatatatacatatatatacatatatatatatatatatat 240
| || |||||||||||||| | | | | |||
Sbjct: 197 ------------------------a-at--atatatatacatatgtgtgtgtgtat---- 169
Query: 241 atatatacacacatacacatatgtgtgtgtgtatatgtgtgtgtattgcctaatagaaaa 300
|| ||||||||||| | ||||||||||||||||||| |||||
Sbjct: 168 ------------------atgtgtgtgtgtgtgtgtgtgtgtgtattgcctaatggaaaa 127
Query: 301 ttttcataaaactgaaaaggtatgggacaaaaaaacactactgttcacattactttgttt 360
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 126 ctttcataaaactgaaaaggtatgggacaaaaaaacactactgttcacagtactttgttt 67
Query: 361 ttaaagccagctgactcttccttgtgccctaacccctacaagagacatgtttaatactta 420
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 66 ttaaagccagctgactcttccttgtgccctaaccccttcaagaaacatgtttaatactta 7
Query: 421 tggaga 426
||||||
Sbjct: 6 tggaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 835
Length adjustment: 9
Effective length of query: 430
Effective length of database: 826
Effective search space: 355180
Effective search space used: 355180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
