BAC Information

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BAC

Clone NameMSMg01-350L04
Chromosome2 (Build37)
Map Location 17,629,362 - 17,629,665
singlet/doubletsinglet
Overlap geneNebl
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneLOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350L04.T7 (MSMg01no350_l04.b1)MSMg01-350L04.TJ (MSMg01no350_l04.g1)
ACCAG462248AG462249
length779754
length of high quality
(start - end)
170 (52 - 221)395 (87 - 481)
definitionCHROMAT_FILE: MSMg01no350_l04.b1 PHD_FILE: MSMg01no350_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:42 2005CHROMAT_FILE: MSMg01no350_l04.g1 PHD_FILE: MSMg01no350_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACCACTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAG
GATCCGCGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTT
GTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGGT
GGTGGTCTCTTTGTCTTATTGACGGGGTCGTTTGCCTTGCGGAGACTTTG
GACGTTTCATTACGTCCCATGTGGCAATTGTCGGTCTTACAGCACGAGCG
GGTGCTGTTCGGTTCAGGAAGTTTTGCCCTGTGTCTGTATCGTCAAGGGG
TTTCCCCACTTTCCGCTCTATAAGCTTACGTGTCTCTGGTTTTATGTGAA
GCTCTTTGATCCATTTATATTTGACCCCCCCCCCCTGATATTATTCTGTT
ATCGATTCCCCTCCTTCTATCTGATTATAACCCGTTGCTTTCCTCTCCAC
TTGTTGTTAATTGCTGTATTTTTTTCCCCTGGCTCGCCTTTAGTTCCCCT
CGTCTATTCTTCTACCTTCATATCCTTTTTCGTCCTTCTTTTCTTGTTTT
TTTATGCTATTTACTCCTCATTACTTTGTATTTATCTCTCCTCCTTATAC
TTGCCGCCCTTATTTCTTTACCCTTTCTTCCTACCCCCTCCTCTATTTAT
TCTCGCTCTTCTCTTCCCCTTTTCCCGTCTGTTCTACTTTCTTTTACTTT
TCCTTTCCTATTACCTTTCTTTCCATTTG
NNNNNNNNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGGTGAACGGA
CTCCTGAAAGTTGTGTGCCTACACACACACACACACACACACACACACAC
AGACATACATGCATGCTCTCACACATGCATGCTCACACACACATAATAAA
TAAATGTGCAAAAAGAGTTATATTTTAAAAGAGTTATTTGATACATATAA
TTTTTCCATTTCTTAAAGAGGAAGGCAAATTTGAATAATGAGATAAACAT
GCTTATTTAGTTTTCCATAAAGAATTAAATGCTTGCTGACTATTTGATAT
GGTAGGACATAGACCATCTTCATTTTCTCCCCCCTCCCAAAATATACTAC
TGTTGTGTGTGTGAAGCTCTGATGTATTATGAGTGTGGGTATAATGTGTG
TCAGTGCATTATTAAAGGACATCTTTCAGAAGTTAGTTCTCTCCTTCAAG
TATGGTTTCTGGATATTGAACTTAATTTGTCCGGCTCTGCCCACGAATCC
TATGTATTTATAAATCCATAACCCTGATAGGTCTTAAGACAGTAGAATTT
CCCCCTCCTGTCTAAATTAATTTTTATATCATCACTTTAGTTCATATATA
CTGTTATTTTTTAACATTTCCTCTCTTACTATAAATATAATTTAAGTTCT
TTTCACAACCATCTTACCCCGCCTTTTTTTTACTAATATCCCATATCTCA
CCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_l04.g1 MSMg01no350_l04.g1 CHROMAT_FILE:
MSMg01no350_l04.g1 PHD_FILE: MSMg01no350_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:42 2005
         (395 letters)



>mm_chr2_17628871_17629665
          Length = 795

 Score =  534 bits (276), Expect = e-156
 Identities = 296/306 (96%), Gaps = 7/306 (2%)
 Strand = Plus / Minus

                                                                       
Query: 95  gctcacacacacataataaataaatgtgcaaaaagagttatattttaaaagagttatttg 154
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gctcacatacacataataaataaatgtgcaaaaagagttatattttaaaagagttatttg 736

                                                                       
Query: 155 atacatataatttttccatttcttaaagaggaaggcaaatttgaataatgagataaacat 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 atacatataatttttccatttcttaaagaggaaggcaaatttgaataatgagataaacat 676

                                                                       
Query: 215 gcttatttag-----ttttccataaagaattaaatgcttgctgactatttgatatggtag 269
           ||||||||||     ||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gcttatttagttttttttt--ataaagaattaaatgcttgctgactatttgatatggtag 618

                                                                       
Query: 270 gacatagaccatcttcattttctcccccctcccaaaatatactactgttgtgtgtgtgaa 329
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 617 gacatagaccatcttcattttctcccccctcccaaaatatattactgttgtgtgtgtgaa 558

                                                                       
Query: 330 gctctgatgtattatgagtgtgggtataatgtgtgtcagtgcattattaaaggacatctt 389
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 557 gctctgatgtattatgagtgtgggtataatgtgtgtcagtgcattattagaggacatctt 498

                 
Query: 390 tcagaa 395
           ||||||
Sbjct: 497 tcagaa 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)