BAC Information

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BAC

Clone NameMSMg01-350O15
Chromosome2 (Build37)
Map Location 7,618,422 - 7,618,722
singlet/doubletsinglet
Overlap genenone
Upstream geneCugbp2, LOC100040659, LOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350O15.T7 (MSMg01no350_o15.b1)MSMg01-350O15.TJ (MSMg01no350_o15.g1)
ACCAG462411AG462412
length1,398782
length of high quality
(start - end)
---301 (79 - 379)
definitionCHROMAT_FILE: MSMg01no350_o15.b1 PHD_FILE: MSMg01no350_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:01 2005CHROMAT_FILE: MSMg01no350_o15.g1 PHD_FILE: MSMg01no350_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCAGTGTCATTCTCATATTATTTTGGGGGTGTCTGGCTATAAGTAGGGA
AGTGCAAGATTGCTTGCTAAAAAGACGAGCAGGGCGCGGGGGGGAGTTTG
GTCGTGGGGTTTTTCACCTACACAGAAACGGAGGTGTATATTACTTACTT
TTGCCCACCGGAGATACGCTAACATACCTTTGTTGTATGTAACCTGAGCT
ATTCCTGTGTGGACACCACTCATTTTCAGTATTGGAGTGGGAGCTGAGTA
TGAATTTAGGAGTCTCGTTCAAGTAGTAGAGCGACGCCGCCATAAGGTGA
TAGTGCCGTGTACCTATCTGTATACCCAACAATTTAGCACATATCCAAGG
CTGCGGTCTTGGTTATATACTAATGTCACACTATAGCTCTCTCCACTGAG
GCGTATATACAAAGAAATACTGTATAGAGCTCGTTATATTATTTTAAATT
ATTATTTCTATATCGTGTCCGTGTCTGCGTCTTCGTCGATATCTCACGGG
GAGTTGTCTGCTCTCTTTGCCTCCATGTAGCGCTTCTGTTATCGTCTACG
TGTACACCTCTACCACATCTTTTGTTATTCTCGTGACNTAATTAAGGGTA
GGAGCGATGCGACAGTTGTGTGGAAGATGTCCGCCCTCTCAGCAGACTAA
TTCTCTATGTTTATTCACTTTTACAATAGACGTGTCCCTTGCATTAATTA
TATTCTCTTTTACTCCGACTACATTCAGTATCCCCGCAGTCGAGTGTCTC
CTCTGCTCGATTCCATCTGTGTTTCATATGTCGATTGATTACCTCTCGCA
TATCCTCATCCGTTTAGATACAGCTGACCGCGTTTNATGACGCGTATCGT
ATGCGTGGCCCGGCCNAGCATATAGATCGTACGCCGGTTTCACATTATTT
CACGTTCATCATCTTGTATTGCCCGCAGGTATGTCACCTTAAATACCACC
ACGCATCCCGTNTCAATATTATCGCGCCTGAGAGCGGCGAAGCTATATAT
TCGCATTACTGTATCACTATATACCTTCTACAGCAACAGTAACCATTCCT
TTAATCCATTCACTTACTGCTTCTATGCTCATTCCTTCGACCTTACTAGC
AATTTGTTCGCACCACGCATCCCTAATCCATCTACATATTCCATCTACTG
TGTTGTATACTACCTACCTTACTATACCGCTCTACTTCACCAACCATCTC
ACTCACGATCCTCTGTTTCTTCCTCTTGTTATTCTCTTTACCTGCTTATA
GATACCCGTCGGTGATAGATTACTGCCTCCCATTTTATCTCTTCCTCTAC
GATTGCGCACCATCTCTTTATACCCATCATCCCCTACTCTATTACTCGAC
TCCGAGTTGATAGAAGCGTAGCGTCATCCCACTTATGCTCATACGCCG
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCAAAATAAAATTCAGTAT
TAATTGAAAATGACAGACACAAAAGTACTCATTCTATAGGATTGCATGGA
TGTATAATTAAACACCTAGTACACCTTTTTTGTTAAAACTTTGACAGGCC
AGGAGTCGAATTCTAGAGTAGGATGAAGAAGAGGTGCTAGTTATATTTTG
TGTCTTGATCTGCAGATGAGTATAGGAATATATTCCTGGTCTGAATGTTA
ATTAAGATGTGTACTTAGGATCTGTTAATCATTTTTGCTTATATATCATA
TTCCCTAACAAATGTTTAAAACTAAATTATGCATCTGATATTGCCACAAC
ATAGCCATTATAAAGTGAATGAGGCATCATTTAGCCTATATTATGCGATA
TACTTAACCAGAAGAATGCTTGGAGTGCAGTGCATGGCCATATCCACCTA
TATAGCTGCTTCCCCGATATGCTAACCTACCTCGATTATATATGCTTCCG
ACTTTCAGCCTAAATGTTAGTGCTTCTTCTACCTTTCACCTCCCTGCTAT
CTAAACTTTTTCCTCTCTCCCTTGACTACACATCCCTGTGAAATATTTCT
TCATCCCTTACCCCTTTTTTTTTCTTCCTTTACCTCTCTTATCTTACTTA
CTTCCTCCTTACCTACTCCTTTTACCCCTCCGGGATTCTTTTTGTGCCCG
TCCCCACATCCCCTTACCCTACCTTCTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_o15.g1 MSMg01no350_o15.g1 CHROMAT_FILE:
MSMg01no350_o15.g1 PHD_FILE: MSMg01no350_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:01 2005
         (301 letters)



>mm_chr2_7618222_7618922
          Length = 701

 Score =  574 bits (297), Expect = e-168
 Identities = 300/301 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcaaaataaaattcagtattaattgaaaatgacagacacaaaagtactcattctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcaaaataaaattcagtattaattgaaaatgacagacacaaaagtactcattctata 260

                                                                       
Query: 61  ggattgcatggatgtataattaaacacctagtacaccttttttgttaaaactttgacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattgcatggatgtataattaaacacctagtacaccttttttgttaaaactttgacagg 320

                                                                       
Query: 121 ccaggagtcgaattctagagtaggatgaagaagaggtgctagttatattttgtgtcttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggagtcgaattctagagtaggatgaagaagaggtgctagttatattttgtgtcttga 380

                                                                       
Query: 181 tctgcagatgagtataggaatatattcctggtctgaatgttaattaagatgtgtacttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcagatgagtataggaatatattcctggtctgaatgttaattaagatgtgtacttag 440

                                                                       
Query: 241 gatctgttaatcatttttgcttatatatcatattccctaacaaatgtttaaaactaaatt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctgtgaatcatttttgcttatatatcatattccctaacaaatgtttaaaactaaatt 500

            
Query: 301 a 301
           |
Sbjct: 501 a 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)