BAC Information

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BAC

Clone NameMSMg01-351A05
Chromosome2 (Build37)
Map Location 140,399,683 - 140,400,226
singlet/doubletsinglet
Overlap genenone
Upstream geneC130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
Downstream geneFlrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351A05.T7 (MSMg01no351_a05.b1)MSMg01-351A05.TJ (MSMg01no351_a05.g1)
ACCAG462487AG462488
length740745
length of high quality
(start - end)		548 (55 - 602)118 (129 - 246)
definitionCHROMAT_FILE: MSMg01no351_a05.b1 PHD_FILE: MSMg01no351_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:09 2005CHROMAT_FILE: MSMg01no351_a05.g1 PHD_FILE: MSMg01no351_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAAAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAGAGAAAGTATCGATGTTCAATTTCTAGATTCCTT
CTGTAGCAAAGAATAAATACCTGACAGATATACTTTGCTTAATCTTTAAA
CTATGAATTAACTGGAAGCCTTTCTTTAATAACTGGAAATATATAGGTTG
TTCATGATAATCCATGCCATCTAACAAAAGTAGAATAAATATGAATCTCT
GAGAAAATAGTAATGTGAACCACTAACAATATAATCATGCTACTTGAGGA
AATGTAATATTGGAGAAGTATTATGTATATATAAACCTCAGAACTTTTCA
CTAAAAGAAGGTATCTTTAGTCAAAGAGAGAAGGATTTTTATCCTATATA
TAGTGTTGGTGATGAAATTCTTTCATATTCCTTCCTTCAGAGCCAGGATC
TTAGTTACATTCCTATTTCTATAACAAACATCATGACCAAGAGAACTTTA
AAAGACATTGTTCATTGGGCTATGGCACCAGAGGGTTAAAATCTCTTATA
TAGCAGAACAAAGGCACGGTGACAGTAACAGTTAAGTGCACACATACGGA
TTCTAAGTANGAGGCAGCATGAGGACACTGGGAATGGTTCATGACTTTTG
AAACCCCAATTCTCATCCATGTTGGCACACCTACATCAACCAGACCACAC
CTCCTAATTCCTTCCCATTGTATTCCATGAACCTGGGGAA

ATGAGAGGCNNNNATAGGGAGATTCTTATTTTNNNNNNNNNTTNNNNNNN
NNCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTAAGTCTCGTTACTCAA
ACATTCTTCCATTCTTTACAATTCTCAGCTTGGTCTCTCTTTTCCCTTTT
GTCATTGGCATTATTATTATTATTATTATTATTATTATTATTATTATAAT
GCGTTTTACTTCTCTTTGGTGGAAAGCAGTTTAGGGTTGAAGCACGAGAA
TCCCTAAATTGTGGCAAGCCTGAGCTACCAAAGACCCCCTCTTAAAAACC
AACCACCCAAACAACCAACCCGGGTTTCCCTAAAGTTATTTGCCCAAGGC
ATGGGAACAATATTGGACCCCAAATTGAAGAAAATGAAGGGAGATTTCCC
AAAACCCCAAAAACCCCCTTTTCTGGGAAAAAAAAAATTTGGGGTGGGGA
AAAAAAAAGAGGGGGACAAAATTCTTTGTTTCTCAAGGGCCCCGGGGCCT
TTAGGAAAAAATACCCTCCGGGAAATAGGGTTTTCCCCCTAAACTCTGGG
AGAAAACAACCTCCCGGAAGGGGGGGTCCCCCCTTTTTTTAAGGAAAAAA
AATTTTTTTTTTTAACCCCCCCCCCGGAAAAAAAAAAACCCCCCCCCCCC
CCCGGGGGGTTTTTTTTTTTTGGGGGGCTTTGGGTTTTCCCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_a05.b1 MSMg01no351_a05.b1 CHROMAT_FILE:
MSMg01no351_a05.b1 PHD_FILE: MSMg01no351_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:09 2005
         (548 letters)



>mm_chr2_140399633_140400580
          Length = 948

 Score = 1029 bits (532), Expect = 0.0
 Identities = 541/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagagaaagtatcgatgttcaatttctagattccttctgtagcaaagaataaat 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gaattcaagagaaagcatggatgttcaatttctagattccttctgtagcaaagaataaat 535

                                                                       
Query: 65  acctgacagatatactttgcttaatctttaaactatgaattaactggaagcctttcttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acctgacagatatactttgcttaatctttaaactatgaattaactggaagcctttcttta 475

                                                                       
Query: 125 ataactggaaatatataggttgttcatgataatccatgccatctaacaaaagtagaataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ataactggaaatatataggttgttcatgataatccatgccatctaacaaaagtagaataa 415

                                                                       
Query: 185 atatgaatctctgagaaaatagtaatgtgaaccactaacaatataatcatgctacttgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atatgaatctctgagaaaatagtaatgtgaaccactaacaatataatcatgctacttgag 355

                                                                       
Query: 245 gaaatgtaatattggagaagtattatgtatatataaacctcagaacttttcactaaaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaaatgtaatattggagaagtattatgtatatataaacctcagaacttttcactaaaaga 295

                                                                       
Query: 305 aggtatctttagtcaaagagagaaggatttttatcctatatatagtgttggtgatgaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aggtatctttagtcaaagagagaaggatttttatcctatatatagtgttggtgatgaaat 235

                                                                       
Query: 365 tctttcatattccttccttcagagccaggatcttagttacattcctatttctataacaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tctttcatattccttccttcagagccaggatcttagttacattcctatttctataacaaa 175

                                                                       
Query: 425 catcatgaccaagagaactttaaaagacattgttcattgggctatggcaccagagggtta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 catcatgaccaagagaactttaaaagacattgttcattgggctatggcaccagagggtta 115

                                                                       
Query: 485 aaatctcttatatagcagaacaaaggcacggtgacagtaacagttaagtgcacacatacg 544
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 aaatcccttatatagcagaacaaaggcacggtgacagtaacagttaagtgcacacatacg 55

               
Query: 545 gatt 548
           ||||
Sbjct: 54  gatt 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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