Query= MSMg01no351_h20.b1 MSMg01no351_h20.b1 CHROMAT_FILE:
MSMg01no351_h20.b1 PHD_FILE: MSMg01no351_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:44 2005
(537 letters)
>mm_chr2_29268971_29269907
Length = 937
Score = 984 bits (509), Expect = 0.0
Identities = 530/537 (98%), Gaps = 2/537 (0%)
Strand = Plus / Plus
Query: 1 aagtgtaatttacctaaggtttttctggatcagctgtgacatagtcctagtttactacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtgtaatttacctaaggtttttctggatcagctgtgacatagtcctagtttactacat 260
Query: 61 gtctgagttttaggtactgcatatcttagtgtttcctcagaccagttctgaagctggcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgagttttaggtactgcatatcttagtgtttcctcagaccagttctgaagctggcaa 320
Query: 121 gacaccagcagatctgatgtgtatgcattctggtaagcacaagcgtagaggacatgctta 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaccagcagatctgatgtgtgtgcattctggtaagcacaagcgtagaggacatgctta 380
Query: 181 cgctgtgctggctgctgccttcacctagtaacccatgtgctcttgtttttatccctagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgctgtgctggctgctgccttcacctagtaacccatgtgctcttgtttttatccctagga 440
Query: 241 gggatataggcacagcaaactacagtgctttccctttctgtgctcatccccatagctacc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gggatataggcacagcaaactacagtgcttttcctttctgtgctcatccccatagctacc 500
Query: 301 agttcccgaaccctaggagaggcctcaggctccgagttagcacccaggctacctttaacc 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttcccgaaccctaggaggggcctcaggctccgagttagcacccaggctacctttaacc 560
Query: 361 ctgtgctgagtattgttcccatttcttcgaatagttaactttagcctggtatgctggcat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 561 ctgtgctgagtattgttcccatttcttcgaatagttaactttagcctggtatactagcat 620
Query: 421 gtgcatgggaggctgaagcagggggatcgttgtttaaggccaccttgggctatatagtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgcatgggaggctgaagcagggggatcgttgtttaaggccaccttgggctatatagtaa 680
Query: 481 gattctatctcaaaacaaaaccaaaaaaaactttcaagaacaaaaaaagacagtttt 537
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 681 gattctatctcaaaacaaaaccaaaaaaa-ctttcaagaacaaaaaa-gacagtttt 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_h20.g1 MSMg01no351_h20.g1 CHROMAT_FILE:
MSMg01no351_h20.g1 PHD_FILE: MSMg01no351_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:45 2005
(493 letters)
>mm_chr2_29424510_29425402
Length = 893
Score = 915 bits (473), Expect = 0.0
Identities = 488/493 (98%)
Strand = Plus / Minus
Query: 1 aatggatatttcccagcctcctttgtggtaacctgagttctggccaacaagatatgttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aatggatatttcccagcctcctttgtggtaacctgagttctggccaacaagatatgttag 641
Query: 61 aaagaacttatgccactactgccaggttgggggcgcagcccactcctgcaaagctcctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaagaacttatgccactactgccaggttgggggcgcagcccactcctgcaaagctcctgt 581
Query: 121 tgtaccatgtggtccaccaagcaaaacatctccatcatgtcagctccccctgcttgcaag 180
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 580 tgtaccatgtggtccaccaagcaaaacatctccatcaggtcagctcctcctgcttgcaag 521
Query: 181 agagcatccacaaggagatggtttactgatgctgacattccctcagagatgaaggaggtg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agagcatccacaaggaggtggtttactgatgctgacattccctcagagatgaaggaggtg 461
Query: 241 gggaaaatcactgggctctcccctgaggttccagcaactccttccagccatctacataca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gggaaaatcactgggctctcccctgaggttccagcaactccttccagccatctacataca 401
Query: 301 atccctctgtaaccgcacacagccctggtggtcttgagaggtgtctaggctggggaaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atccctctgtaaccgcacacagccctggtggtcttgagaggtgtctaggctggggaaggt 341
Query: 361 taattgaggggctctctctgttctgccaagaggatgctgtcatgtgggacacagattttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taattgaggggctctctctgttctgccaagaggatgctgtcatgtgggacacagattttc 281
Query: 421 cagtgcagctgctttggggtcccccatgctctggtcactaacccctcatccattttctgt 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cagtgcaactgctttggggtcccccatgctctggtcactaacccctcatccattttctgt 221
Query: 481 aaataaacccaat 493
|||||| ||||||
Sbjct: 220 aaataagcccaat 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
