BAC Information

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BAC

Clone NameMSMg01-351I05
Chromosome2 (Build37)
Map Location 50,857,578 - 51,053,258
singlet/doubletdoublet
Overlap geneRnd3
Upstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
Downstream geneLOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351I05.T7 (MSMg01no351_i05.b1)MSMg01-351I05.TJ (MSMg01no351_i05.g1)
ACCAG462865AG462866
length735749
length of high quality
(start - end)		280 (50 - 329)524 (83 - 606)
definitionCHROMAT_FILE: MSMg01no351_i05.b1 PHD_FILE: MSMg01no351_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:46 2005CHROMAT_FILE: MSMg01no351_i05.g1 PHD_FILE: MSMg01no351_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,857,578 - 50,857,851)(51,052,735 - 51,053,258)
sequence
NNNTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCTTCCTGTTATGCTCACTGTAACTTCAATTTCTAACTTTT
CAAGCTCAACAAGAGCTTTCCCAAAGGGCTTCACAGAATACAAATGTGTT
TCGCAAGTTTTGAGGGATCCAGATTCCTTAAGGCTGCTGCTGTAATTGTT
GAGGTGTATGGAAAACATACTCTCAAGGGACATTCAGATAGCTTGCTTGG
CTCTGTACAGTTCTGTATTTCATTCAGTGTCCACATGGAAGACGTATGGA
GCAGACAATGGGTACTCAATTGGACCAATATTTTTGCAATCATAGCTTAA
TATCCCATATGCCACCTAGACAAATGACTAACATAAAGTATGTATGCCAT
GTGAAGACACACTATGAATATAAATGACAAAATGTGTGTGTGCATATATG
TATACCATAACACACATGGATTGCGAATGCATAAATAAATACTTAAACCT
AGACGATAAGACAGAAATACAATCATACCACCAACAGATAATGTAAATGC
TAGGATGAATAGCCAAGGGATTAAGCCAAGCGACGCCTCTAATGGCAAAG
GACAGGGATAGAAGTTTTATGTGTATTCCCCTGTTTTCTTAGCAAGCTCT
AAAGAACGAAGTTTATAATTTTATCTTAAAAAACAATTTAATTTAAAGTG
CTTGTTATAACAAATATTTACATTTGTTTATGAGA

NNNNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGAGGTGAGACAGCT
TTCTTACACATTGAATATGTGCATGTGGTTTTGTTCTAGTTTTATAAAGA
TGTAAATCTAAAACAACTTTGACAACTTCTATTTCTCCTTCTCTCTGCTC
CTACTCTTCTTGTGGATGCAATGTCCTGGCCTCTTGCTTTTCAAGTCCCA
TTTGTAAAGGGGTTATTGTCTTTCAAAATTATTGCTCTAAGAATCTAAGA
AAATTGACTTTTTTAGTGCTGAAGTAGCAAGTAATTCTAGCTATATTGTG
CCTCCCAGAGAGGAAAAACATAGAGACTCTGGGCTGTCTATAAAAGCAAT
GCATTCCAGGATGCAGGGCCATCCTTCATGGAGGTCATGGTTATTCATGT
ATGCTAGCTGTTTCTATTTAACTCCAATGATCTGCTGGCCCTGACAGAGT
CAGGAGTCTCTAGCATATATGCTTCTTTCTGTAATGATCTCTTTTGGAGA
ATTTCCGGTGAAAGTTGAATGGTGTTCTGTGTTTCTAGGAAATAATTGTA
TCTTCCTGGGGGAAAGTGCCAAGGGTCTGTAATACGTAAGTAATAACTAA
CCTTGATTTACCAAAATTGAAAGTCTAGCTGAAAAAGTTTGGCCTTATGA
ACTTGAATTTCTCAAAATTCTCCTTCCCCATTTTCTAAAACTTTAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_i05.b1 MSMg01no351_i05.b1 CHROMAT_FILE:
MSMg01no351_i05.b1 PHD_FILE: MSMg01no351_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:46 2005
         (280 letters)



>mm_chr2_50857372_50858051
          Length = 680

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttcctgttatgctcactgtaacttcaatttctaacttttcaagctcaacaagag 66
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttcctgttagggtcactgtaacttcaatttctaacttttcaagctcaacaagag 266

                                                                       
Query: 67  ctttcccaaagggcttcacagaatacaaatgtgtttcgcaagttttgagggatccagatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctttcccaaagggcttcacagaatacaaatgtgtttcgcaagttttgagggatccagatt 326

                                                                       
Query: 127 ccttaaggctgctgctgtaattgttgaggtgtatggaaaacatactctcaagggacattc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccttaaggctgctgctgtaattgttgaggtgtatggaaaacatactctcaagggacattc 386

                                                                       
Query: 187 agatagcttgcttggctctgtacagttctgtatttcattcagtgtccacatggaagacgt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agatagcttgcttggctctgtacagttctgtatttcattcagtgtccacatggaagacgt 446

                                             
Query: 247 atggagcagacaatgggtactcaattggaccaat 280
           ||||||||||||||||||||||||||||||||||
Sbjct: 447 atggagcagacaatgggtactcaattggaccaat 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no351_i05.g1 MSMg01no351_i05.g1 CHROMAT_FILE:
MSMg01no351_i05.g1 PHD_FILE: MSMg01no351_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:46 2005
         (524 letters)



>mm_chr2_51052535_51053458
          Length = 924

 Score = 1013 bits (524), Expect = 0.0
 Identities = 524/524 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgaggtgagacagctttcttacacattgaatatgtgcatgtggttttgttctagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 atttgaggtgagacagctttcttacacattgaatatgtgcatgtggttttgttctagttt 665

                                                                       
Query: 61  tataaagatgtaaatctaaaacaactttgacaacttctatttctccttctctctgctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tataaagatgtaaatctaaaacaactttgacaacttctatttctccttctctctgctcct 605

                                                                       
Query: 121 actcttcttgtggatgcaatgtcctggcctcttgcttttcaagtcccatttgtaaagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 actcttcttgtggatgcaatgtcctggcctcttgcttttcaagtcccatttgtaaagggg 545

                                                                       
Query: 181 ttattgtctttcaaaattattgctctaagaatctaagaaaattgacttttttagtgctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttattgtctttcaaaattattgctctaagaatctaagaaaattgacttttttagtgctga 485

                                                                       
Query: 241 agtagcaagtaattctagctatattgtgcctcccagagaggaaaaacatagagactctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agtagcaagtaattctagctatattgtgcctcccagagaggaaaaacatagagactctgg 425

                                                                       
Query: 301 gctgtctataaaagcaatgcattccaggatgcagggccatccttcatggaggtcatggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gctgtctataaaagcaatgcattccaggatgcagggccatccttcatggaggtcatggtt 365

                                                                       
Query: 361 attcatgtatgctagctgtttctatttaactccaatgatctgctggccctgacagagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 attcatgtatgctagctgtttctatttaactccaatgatctgctggccctgacagagtca 305

                                                                       
Query: 421 ggagtctctagcatatatgcttctttctgtaatgatctcttttggagaatttccggtgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggagtctctagcatatatgcttctttctgtaatgatctcttttggagaatttccggtgaa 245

                                                       
Query: 481 agttgaatggtgttctgtgtttctaggaaataattgtatcttcc 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agttgaatggtgttctgtgtttctaggaaataattgtatcttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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