Query= MSMg01no351_j18.b1 MSMg01no351_j18.b1 CHROMAT_FILE:
MSMg01no351_j18.b1 PHD_FILE: MSMg01no351_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:54 2005
(531 letters)
>mm_chr2_163416023_163416953
Length = 931
Score = 882 bits (456), Expect = 0.0
Identities = 510/528 (96%)
Strand = Plus / Minus
Query: 4 ggaattctcagaggttctaaggaacatgttcctgtcaggcttgtttagggggagaccccc 63
|||||||||||||| |||||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 731 ggaattctcagagggtctaaggaacatttttctgacaggcttgtttagggggagaccccc 672
Query: 64 atccctggaaattggggacctagggtccaggcctggttcgttctctaggtccctgtgaca 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 671 atccctggaaattggggacctagggtccaggcctggttccttctctaggtccctgtgaca 612
Query: 124 taacattgtgagtcactggtgtcccaatcacagaaaaatgtcttcctgatgctaggtttt 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgacattgtgagtcactggtgtcccaatcacagaaaaatgtcttcctgatgctaggtttt 552
Query: 184 ctctatctcccttgctttccctcatctgctcttccccaaagcctgggaagaaatgagcag 243
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 551 ccctatctcccttgctttccctcatccgctcttccccaaagcctgggaagaaatgagcag 492
Query: 244 gtgtaatggttagcgctcacaggtgtttcttcagcaaggaagagactgagtatgccagac 303
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 491 gtgtaatggttagcgctcacaggtgtttcttcagcaaagaagagactgagcatgccagac 432
Query: 304 ccaaccagatgggtagcacatggtggcccgtggggagtggtcccagaaattattccccca 363
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 431 ccaaccagatgggtagcacattgtggcccatggggagtggtcccagaaattattccccca 372
Query: 364 cccaatatgtaaagtagatgtcaggcctctccccaggcaggggatgatgggaactttctg 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 371 cccaatatgtaaaggagatgtcaggcctctccccaggcaggggatgatgggaattttctg 312
Query: 424 cctatcttcccactaacgacttcagttcctgtcagggctgggcccacaggccataaatcg 483
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccgatcttcccactaacgacttcagttcctgtcagggctgggcccacaggccataaatcg 252
Query: 484 ctttactcattcgttcctcagtatctggcagctcaccgtttgtcagga 531
||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 251 ctttactcattcgttgctcagtatctggcagctcagggtttgtcagga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_j18.g1 MSMg01no351_j18.g1 CHROMAT_FILE:
MSMg01no351_j18.g1 PHD_FILE: MSMg01no351_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:54 2005
(503 letters)
>mm_chr2_163230882_163231784
Length = 903
Score = 919 bits (475), Expect = 0.0
Identities = 496/503 (98%), Gaps = 1/503 (0%)
Strand = Plus / Plus
Query: 1 acccttccagttaaaagtgagcttgagccatttaaccaaacttcggagaggactttataa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 acccttccagttaaaagtgagcttgagccatttaaccaaacttcgaagaggactttataa 260
Query: 61 caactcaccataagtgtatcaggtatgaaatcctccagagattctagggtagggggtaac 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgactcaccataagtgtatcaggtatgaaatcctccagagattctagggtagggggtaac 320
Query: 121 gtctaaaacatattgaggggcataagacctatattgtgctaggcagtggtggcgcacacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gtctaaaacatattgaggggcataagacctatattgtgctaggcagtggtggcgcacgcc 380
Query: 181 tttaatctcagcacttgggaggcagaggcagaggccgaggcaggcagatttcgaggccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatctcagcacttgggaggcagaggcagaggccgaggcaggcagatttcgaggccag 440
Query: 241 cctggtctacataatgagttccaggacagccagggctacacagagaaaccttgtctcaaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctggtctacagaatgagttccaggacagccagggctacacagagaaaccttgtctcaaa 500
Query: 301 aaccaaaggggggaaaaaaaagacctatattgcaactgaccacaaacaaaacatcacaca 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccaaaggggggaaaaaaa-gacctatattgcaactgaccacaaacaaaacatcacaca 559
Query: 361 cataaacaccagagatggaggcaacacaacatactgatttcagtacaacacacactcata 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 cataaacaccagagatggaggcaacacaacacactgatttcagtacaacacacactcata 619
Query: 421 catgccaagtgcttagcagtcccactttaaacagcttaagaaacaacacacaatacctct 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cataccaagtgcttagcagtcccactttaaacagcttaagaaacaacacacaatacctct 679
Query: 481 ggataaacagcaccagcaggggt 503
|||||||||||||||||||||||
Sbjct: 680 ggataaacagcaccagcaggggt 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
