BAC Information

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BAC

Clone NameMSMg01-351L01
Chromosome2 (Build37)
Map Location 31,589,109 - 31,771,502
singlet/doubletdoublet
Overlap geneAbl1, BC094274, Fibcd1, Lamc3
Upstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2
Downstream gene2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351L01.T7 (MSMg01no351_l01.b1)MSMg01-351L01.TJ (MSMg01no351_l01.g1)
ACCAG463001AG463002
length749754
length of high quality
(start - end)		511 (53 - 563)482 (85 - 566)
definitionCHROMAT_FILE: MSMg01no351_l01.b1 PHD_FILE: MSMg01no351_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:00 2005CHROMAT_FILE: MSMg01no351_l01.g1 PHD_FILE: MSMg01no351_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,771,080 - 31,771,502)(31,589,109 - 31,589,407)
sequence
NNNNNTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACAGAACTGGCCTGTGTATCCCTGGGGACATAAGCAGG
TCTCCACCCAAGAGGCTGGAGGGGCAAGCTCACGCTGGGGCCGGGCCGAT
GTGAGCTGAACTTCACACAAGAGCACTTGGCCTGCAGAATGAGAAGCAAG
GGGGGACCTGCATCCATGTCCAGTCGATACTTCCTGAGAATCCACAATGG
GGCTCATGCATGCAAAGGGGTCAACTGTTTGTTTGAGACAGGGTGTTAGC
TGTATAGCCTGTGCAGTATTCAAGCTTGCGATCCTCTGGCCTTGACCTCT
TAAGTGCTGGGATTACAGGCATGAATTACTGCTACGCCAGGCTTGAAGAA
CAATTTTAAAATTAACAGTCAAGGCCGGGCATGGTGGTGCATGCCTTTAA
TCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAG
CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAATCCT
GTCTTGAAAAAAAAACCAAAAAAACCATAAACAAAATTAAACATACCAAC
AAACTACAACACAGCTGGGTGAATTTAGAATCCTTATCAGCTCCTGAAGG
GGATGAGGTGCAATGTCATTGTTGGCCCCCAGGGTGAGAACCGCTCACCG
GAAGAAGTAGGAATGGAACGGTATTGTATCCCGTCCAAGCATTAGATCG

NNNNCCAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCACCCTTCACTG
CTCTTGGTCCCTCATGTTCCTTCAGCACAATATTTATGAGAAGGATGGGA
GCTCGGAGCAGGCTGGCCTGGGGAGTGTTTCTCACATGGTGTCTGTGAGC
ATCCTACCCATTTACAGCCCTAGGAAGGAGTCATTCCCTGGCAGACGCAG
TGGGTTCTACTCAGATGCTCTGGCCTCCAACAGCCGCTTTCACTTACTGC
CATTGTTTAAACAAGTGCTGTTCCTGGAAGTGGTTTCAGAATAGTCTGTC
CTTGTAGCTCGCTGCTCCTTTGCTCTTGTTTTTGAAAGTGTTTTCTTAAT
GATAAGCAGAAGAAGCCCAAGCACAGCACACGAAGACTCTGCTAGTCCAG
CCTCCACCTGCTGACTTGCTATAGTCAGTAGTGTTGCGATTTAGATCTCT
TTATTTTATAAAACTAAAGAGATTCTTTGGTTGCCTGGCACCCCCATTGC
GCACCATTGAGGAGCTCTGAGGTCTGAAAGTCATCTTGAACAGTGATAGA
GAATGAGCTTTTATTACTTTGTAAATATAAAAAATCCAACAAGAGCCAGA
GATGGGCTACCTAAATTGTTAACATGGTTTTCAAGNGACCTTTATAATTC
CCCTATCTCAAATTTTTTAAAAAGGGACGCCATATCCTAAATGAGAATAA
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_l01.b1 MSMg01no351_l01.b1 CHROMAT_FILE:
MSMg01no351_l01.b1 PHD_FILE: MSMg01no351_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:00 2005
         (511 letters)



>mm_chr2_31771080_31771990
          Length = 911

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagaactggcctgtgtatccctggggacataagcaggtctccacccaagaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaattcacagaactggcctgtgtatccctggggacataagcaggtctccacccaagaggc 364

                                                                       
Query: 65  tggaggggcaagctcacgctggggccgggccgatgtgagctgaacttcacacaagagcac 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 363 tggaggggcaagctcacgctggggccaggccgatgtgagctgaacttcacacaagagcac 304

                                                                       
Query: 125 ttggcctgcagaatgagaagcaaggggggacctgcatccatgtccagtcgatacttcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttggcctgcagaatgagaagcaaggggggacctgcatccatgtccagtcgatacttcctg 244

                                                                       
Query: 185 agaatccacaatggggctcatgcatgcaaaggggtcaactgtttgtttgagacagggtgt 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agaacccacaatggggctcatgcatgcaaaggggtcaactgtttgtttgagacagggtgt 184

                                                                       
Query: 245 tagctgtatagcctgtgcagtattcaagcttgcgatcctctggccttgacctcttaagtg 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcgctgtatagcctgtgcagtattcaagcttgcgatcctctggccttgacctcttaagtg 124

                                                                       
Query: 305 ctgggattacaggcatgaattactgctacgccaggcttgaagaacaattttaaaattaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctgggattacaggcatgaattactgctacgccaggcttgaagaacaattttaaaattaac 64

                                                                       
Query: 365 agtcaaggccgggcatggtggtgcatgcctttaatcccagcactcgggaggcagaggcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  agtcaaggccgggcatggtggtgcatgcctttaatcccagcactcgggaggcagaggcag 4

              
Query: 425 gca 427
           |||
Sbjct: 3   gca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_l01.g1 MSMg01no351_l01.g1 CHROMAT_FILE:
MSMg01no351_l01.g1 PHD_FILE: MSMg01no351_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:00 2005
         (482 letters)



>mm_chr2_31588909_31589790
          Length = 882

 Score =  571 bits (295), Expect = e-167
 Identities = 298/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctcacccttcactgctcttggtccctcatgttccttcagcacaatatttatgagaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctcacccttcactgctcttggtccctcatgttccttcagcacaatatttatgagaagg 260

                                                                       
Query: 61  atgggagctcggagcaggctggcctggggagtgtttctcacatggtgtctgtgagcatcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 atgggagctcggagcaggctggcctggggagtgtttctcacatggtgtctgtgagcgtcc 320

                                                                       
Query: 121 tacccatttacagccctaggaaggagtcattccctggcagacgcagtgggttctactcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccatttacagccctaggaaggagtcattccctggcagacgcagtgggttctactcag 380

                                                                       
Query: 181 atgctctggcctccaacagccgctttcacttactgccattgtttaaacaagtgctgttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctctggcctccaacagccgctttcacttactgccattgtttaaacaagtgctgttcc 440

                                                                      
Query: 241 tggaagtggtttcagaatagtctgtccttgtagctcgctgctcctttgctcttgttttt 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaagtggtttcagaatagtctgtccttgtagctcgctgctcctttgctcttgttttt 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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