BAC Information

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BAC

Clone NameMSMg01-351M23
Chromosome2 (Build37)
Map Location 169,100,570 - 169,100,977
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351M23.T7 (MSMg01no351_m23.b1)MSMg01-351M23.TJ (MSMg01no351_m23.g1)
ACCAG463091AG463092
length717768
length of high quality
(start - end)
62 (51 - 112)394 (86 - 479)
definitionCHROMAT_FILE: MSMg01no351_m23.b1 PHD_FILE: MSMg01no351_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:09 2005CHROMAT_FILE: MSMg01no351_m23.g1 PHD_FILE: MSMg01no351_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACCTCATTGTCGCCAAGGGGTTGGGGGACCAGCTACTTA
CTTAATGCACTTTTAAAGTCANAAGTCTATGCCTNNTGGACAGAAGCACA
GCCNNTGGNACAAGTATTATGTCCCTAACCTGGGATGCCCTGGNNGAGGT
GCNNCTGCNNGTGGAAAGCTCAATACCCCCAGCAATGNTTTGCAAGAGAG
TNNCTCCGCTTGANNANTCAGGNNAGACAGAANACATAGAGAGGGNTATT
TCCCCAAAATTCTCGGATTCCCTTTACCGGAAAAAATATTTTAAACCGGG
ACCCTCCCCCCAAAGGGGTATCTTTGGGTTTTTCCCCCCCGGGCCCGGGA
AAAAAAAAAACCCCCCCCCGTGGGGGAAACACACACCCCCCCCCCGAAAA
AAAAATTTTTTCTCCCCCCTTGGGGGCCCCCNNAAAANNNNNTGGTCCCC
CCAAAAAATTTTTTAAAAAAAAAAAANNTNNGGGGTATTTTTTTCCCCCC
CCTCCCCCCCCCCCCCCCNNNATTTTAAAAAAAACCCCCCCAAAAAAAAT
TCCCCCCCCCCCCTCCCCCTTTAATATAAAAAAAACCCCCCTCCCCCCCC
AACCCCAGGAAAAGGAGAAAAAAACCCCCCACCCTCCCCGCCCGGGGGGG
GGGAGGGGGGGGGGGGG
CCCAAAAANCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCAGTGTCACCT
GTACACACACACACACACACACACACACACACACACACACACACACACTC
ACACACTCACACACTCACACACACTCACACACCATACATGCCCCACACGG
GCACACATGCACATACAGAGTAATTCAAGCGTCTTACAGGCCCAGCAGAG
AATGATCTCATCCGAAATGCAAAAAAGGGAGGCTTATGGAGGTGAGTGAG
AGGAAAACCTCAAACAACTTTATACTAGGTGACTAGTTGGCTAACTACCT
AACTTCTTATCTAGTTAGCTGTCTAACTAATGCTAAGAAGCACTTCCGAC
TGAATAGACTGAGTCTTATCCCAATCAGGAACTCACCAACTTGAGGGATA
CAAGAGCTTGCTGAGGGCATGCCCACGCCTCCACCCAGGATAGTATATGG
TAGAGGAGTAACTTGCTTGGCTTAAACTGAAGTTCCCATACTGACACAAC
ACTAAGCCATCTGGGGCAATGTCACTACAGCCACAGTGTGAGGGTGAGCA
ACCACCCCCAGCAACATGACCCCCANCAAAAGACGGACCCCACCTTGAAT
AAACGTTTGCTTTGCAGTAAAAAGAACACCCCCGGAATTTCCCGCCCCTT
GTAAAAAAAAAAAAAAAAAGGTTTTGTGGGTTGCGAACCCCCCCCGGAGG
AAAAAAAAAAAAGGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_m23.g1 MSMg01no351_m23.g1 CHROMAT_FILE:
MSMg01no351_m23.g1 PHD_FILE: MSMg01no351_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:09 2005
         (394 letters)



>mm_chr2_169100382_169101177
          Length = 796

 Score =  673 bits (348), Expect = 0.0
 Identities = 387/408 (94%), Gaps = 14/408 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccagtgtcacctgtacacacac------------acacacacacacacacacacaca 48
           |||||||||||||||||||||||||            |||||||||||||||||||||||
Sbjct: 189 accccagtgtcacctgtacacacaccacaccacacacacacacacacacacacacacaca 248

                                                                       
Query: 49  cacacacacacacactcacacactcacacactcacacacactcacacaccatacatgccc 108
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 249 cacacacacacacacacacacactcacacactcacacacactcacacaccatatatgccc 308

                                                                       
Query: 109 cacacgggcacacatgcacatacagagtaattcaagcgtcttacaggcccagcagagaat 168
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 309 cacacgggcacacatgcacaaacagagtaattcaagcgtcttacaggcctagcagagaat 368

                                                                       
Query: 169 gatctcatccgaaatgcaaaaaagggaggcttatggaggtgagtgagaggaaaacctcaa 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gatctcatccgaaatgcaaaaaagggaggcttatggaggtgagtgagaggaaaacctcaa 428

                                                                       
Query: 229 acaactttatactaggtgactagttggctaactacctaacttcttatctagttagctgtc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acaactttatactaggtgactagttggctaactacctaacttcttatctagttagctgtc 488

                                                                       
Query: 289 taactaatgctaagaagcacttccgactgaatagact--gagtcttatcccaatcaggaa 346
           ||||||||||||||||||||||| |||| ||||||||  |||||||||||||||||| ||
Sbjct: 489 taactaatgctaagaagcacttctgactaaatagactcagagtcttatcccaatcagtaa 548

                                                           
Query: 347 ctcaccaacttgagggatacaagagcttgctgagggcatgcccacgcc 394
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctcaccaacttgagggatacaagagcttgctgagggcatgcccacgcc 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 796
Length adjustment: 9
Effective length of query: 385
Effective length of database: 787
Effective search space:   302995
Effective search space used:   302995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)