BAC Information

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BAC

Clone NameMSMg01-352G08
Chromosome2 (Build37)
Map Location 174,750,042 - 174,750,288
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352G08.T7 (MSMg01no352_g08.b1)MSMg01-352G08.TJ (MSMg01no352_g08.g1)
ACCAG463533AG463534
length787836
length of high quality
(start - end)
386 (53 - 438)247 (82 - 328)
definitionCHROMAT_FILE: MSMg01no352_g08.b1 PHD_FILE: MSMg01no352_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:55 2005CHROMAT_FILE: MSMg01no352_g08.g1 PHD_FILE: MSMg01no352_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCACCTGTACAATACCGAATGGCAGAGAAGCACCTGAA
AAAATGTTCAACATCCTTAATGATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGAGTGCAGACTTGTACAACCACTCTGGAAATCAGTCTAGCGGT
TCCTCAGAAAATTGGACATAGTACTACCTGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCT
TCACTATGTTCATAGTAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCCTCACAGAGGAATGGATACAGAAAATGTGGGTTATCTA
CACTATAGAGCACTACTCCCCCTATTAAAACAATGAATTTTTAAAATTCC
TATCCCCATGGAGGGATCTTGGAGCCCTCTATCCTGAGCGCAGTATTTCC
CTCCCCAAGGAACCCCCATCTATAGTTTCCCCTTCAAAGGCACATTTAAC
CCCCCCCTCCCTGCCTTCCCTCTTATTTTCTTAACACTCTTTTTTTATTC
CCCCCCTCTTCCCCCCTCCTCTCTTTTTTTCTTTCTCCCAACCCTCCCCT
TCTTTTTCCTTCCCCTTTCCCCTTCCCCCTTCCCTTT
ATTTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCAGGACAGAGTGGGA
GAGAGTATGAAGTGCCCACATAGTTCCTGGCACACAATGGCACAGTGGGA
GGTTTACTGAGTCAGACCGCAAAGGTTATGAGCTTACCCATCTCCCAGTA
GATGGTCTAGAGCGCTCACAATGGCCCTTGAGTGGAAAGGGAGGGCAGGA
CTGTGGGTGGATCAGAAAGTGACATACTATAGAGCACGGCTAGGACATTG
TCTACCTCCCAGGCATGGCTCATCAGCACGATTACAGGTAGAGAAAGGAA
TATGGTATTTCCTCTTGAGCTAGACGGAACAAACAATTCAAATGTTCCAG
AATCTTACACATTCTTTTGTATTTCACCACCTTTTGATATCCTACCCTTC
TTCTTTCCCATTTTTCCCATTTTTCCTTCTTTCCCCCCTTATGCCTTTAT
CTCTTTCCTCTCTCTTCCTTCCTCCTCCTCTCCCTCTTTCTTCTTATTAC
CGTCCTGTTTCCTCATCTTTTCCCCCTTTTACTTTTTCCTTCTTCTTATT
CCCCTCTTCTCTTTCCCTTCCCTTACCTTTCTATCTTCCTTCTCTTCTCC
TACCCTCCTTCCCCTTTTTTCTTTTTTTCCTTTTTCCTCCCTTTCCCTTT
TTCCCCTCCCTCTTCCCCTTTTCTTCCTCCCGCTCCTCCTCTTTTCTTTC
TTTACCCCACTTTTCCCCATCCCTCTCTTTTCTTACCTCCTCCCTCCCCT
CCTTTCTTTCGCCCCTTCCCTTCTCTCCTCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_g08.g1 MSMg01no352_g08.g1 CHROMAT_FILE:
MSMg01no352_g08.g1 PHD_FILE: MSMg01no352_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:56 2005
         (247 letters)



>mm_chr2_174749842_174750488
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcaggacagagtgggagagagtatgaagtgcccacatagttcctggcacacaatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcaggacagagtgggagagagtatgaagtgcccacatagttcctggcacacaatggc 260

                                                                       
Query: 61  acagtgggaggtttactgagtcagaccgcaaaggttatgagcttacccatctcccagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtgggaggtttactgagtcagaccgcaaaggttatgagcttacccatctcccagtag 320

                                                                       
Query: 121 atggtctagagcgctcacaatggcccttgagtggaaagggagggcaggactgtgggtgga 180
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 atggtctagggcgctcacaatggcccttgagtggaaaggaagggcaggactgtgggtgga 380

                                                                       
Query: 181 tcagaaagtgacatactatagagcacggctaggacattgtctacctcccaggcatggctc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagaaagtgacatacaatagagcacggctaggacattgtctacctcccaggcatggctc 440

                  
Query: 241 atcagca 247
           |||||||
Sbjct: 441 atcagca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)