Query= MSMg01no352_h10.b1 MSMg01no352_h10.b1 CHROMAT_FILE:
MSMg01no352_h10.b1 PHD_FILE: MSMg01no352_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:01 2005
(240 letters)
>mm_chr2_54545209_54545849
Length = 641
Score = 420 bits (217), Expect = e-122
Identities = 235/241 (97%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 1 ggatttctttttcatagctatgcctggaaattctgtactgcaaatctttcaaacattgat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ggatttctttttcatagctatgcctggaaattctgtactgcaaatcttccaaacattgat 260
Query: 61 tagccttggaagattttgcctgtaagatttcaacattacttcaagactgcattccaattc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tagccttggaagattttgcctgtaagatttcaacattacgtcaagactgcattccaattc 320
Query: 121 tgatggatatttataataaaattatcaaatggatcttttatgattcttttttatgcattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatggatatttataataaaattatcaaatggatcttttatgattcttttttatgcattc 380
Query: 181 caccatctcaagtcacctttctatttttt-gggttttgctcatttgtttgtttgtttgtt 239
||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |||||||
Sbjct: 381 caccatctcaagtcacctttctatttttttgggttttgttcacttgtttgttcgtttgtt 440
Query: 240 g 240
|
Sbjct: 441 g 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space: 145992
Effective search space used: 145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no352_h10.g1 MSMg01no352_h10.g1 CHROMAT_FILE:
MSMg01no352_h10.g1 PHD_FILE: MSMg01no352_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:01 2005
(361 letters)
>mm_chr2_54753339_54754099
Length = 761
Score = 658 bits (340), Expect = 0.0
Identities = 358/364 (98%), Gaps = 4/364 (1%)
Strand = Plus / Minus
Query: 1 attagtcatatttagatataaaaagaaacattcattttataaaggaatatatcagagtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 attagtcatatttagatataaaaagaaacattcattttataaaggaatatatcagagtac 348
Query: 61 attgaacataaatcacaggataatatttcatttttatcctatattggtattataacactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 attgaacataaatcacaggataatatttcatttttatcctatattggtattataacactt 288
Query: 121 ttcatccactgtattttaatgatgtttcatctccctcaacttctccctagtccatctcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttcatccactgtattttaatgatgtttcatctccctcaacttctccctagtccatctcac 228
Query: 181 ttccaaacctacacaatttaatatacttcctcctcctcctcctcctcctcctcctcctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttccaaacctacacaatttaatatacttcctcctcctcctcctcctcctcctcctcctcc 168
Query: 241 tcctcctcctcttcttctctct-ct-ct-ctctctctctctctctctctctctctctctc 297
||||| || ||||||||| ||| || || |||||||||||||||||||||||||||||||
Sbjct: 167 tcctcttcttcttcttct-tcttcttcttctctctctctctctctctctctctctctctc 109
Query: 298 tctctctctctctgggtctctccttccctccctccctccccctctctctcaaaatacttc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tctctctctctctgggtctctccttccctccctccctccccctctctctcaaaatacttc 49
Query: 358 ccaa 361
||||
Sbjct: 48 ccaa 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 32
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space: 264704
Effective search space used: 264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
