Query= MSMg01no352_j23.b1 MSMg01no352_j23.b1 CHROMAT_FILE:
MSMg01no352_j23.b1 PHD_FILE: MSMg01no352_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:14 2005
(494 letters)
>mm_chr2_150311320_150312213
Length = 894
Score = 870 bits (450), Expect = 0.0
Identities = 480/490 (97%), Gaps = 2/490 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggcaacctgtc-catatgtttcacctgatggtaatgagacaactctcagagca 63
|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggcaacctg-cacatatatttcacctgatggtaatgagacaactctcagagca 263
Query: 64 aagcaggaaacacatgacaaacactgtggagccctcttgtaaaccagcacatacatcttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagcaggaaacacatgacaaacactgtggagccctcttgtaaaccagcacatacatcttc 323
Query: 124 ctcaatgggtctgtaaagcaaacaaaacaacaacaacaaacctgcggctttgttagtgaa 183
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 324 ctcaatgggtctgtaaagcaaacaaaacaacaacaacaaacccgcggctctgttagtgaa 383
Query: 184 ggattttcagatgaacagaactgatagaatgaaactttctattatgtagaaaatggattt 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 ggattttcagatgaacagaactgatagaacgaaactttctattatgtagaaaatggattt 443
Query: 244 attagaatgattcactatgttccactagtccaacaatggctaactactatggacagttga 303
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attagaatgattcattatgttccactagtccaacaatggctaactactatggacagttga 503
Query: 304 agaatccaatagtgactagatgtctccgctggtcttcagtatatacctgaatttcaaaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaatccaatagtgactagatgtctccgctggtcttcagtatatacctgaatttcaaaga 563
Query: 364 gataagttctgatgccagaaaaattcctagcaagcagactaagaaagatctaccatcttc 423
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gataggttctgatgccagaaaaattcctagcaagcagactaagaaagatctaccatcttc 623
Query: 424 aatctcctttatatatatatgtaggctaccatcacaagctgtggtcttgattaaaggtgg 483
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 agtctcctttatatatatatgtaggctaccatcacaagctgtggccttgattaaaggtgg 683
Query: 484 atcttattac 493
||||||||||
Sbjct: 684 atcttattac 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_j23.g1 MSMg01no352_j23.g1 CHROMAT_FILE:
MSMg01no352_j23.g1 PHD_FILE: MSMg01no352_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:14 2005
(397 letters)
>mm_chr2_150540105_150540897
Length = 793
Score = 733 bits (379), Expect = 0.0
Identities = 391/397 (98%), Gaps = 4/397 (1%)
Strand = Plus / Minus
Query: 1 accatttgctctcatctttcaatatttgtactccttctatttgaaatatgtgcagacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 accatttgctctcatctttcaatatttgtactccttctatttgaaatatgtgcagacatc 534
Query: 61 ttgacatctcacacaaatgcttcagcatacatttccaaaggaaacattctgtgaaacttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttgacatctcacacaaatgcttcagcatacatttccaaaggaaacattctgtgaaacttc 474
Query: 121 aaaaccattctctatgggtacatatactagattgtgatcaagtattcagtctatattcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaaaccattctctatgggtacatatactagattgtgatcaagtattcagtctatattcag 414
Query: 181 ccccccccccctcaatgcatttatatataattggttctatttagaagccagagtttggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ----ccccccctcaatgcatttatatataattggttctatttagaagccagagtttggct 358
Query: 241 aaagatcatggactttatttagtggtgacatagtcttttgttttgttttgagagaagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaagatcatggactttatttagtggtgacatagtcttttgttttgttttgagagaagaat 298
Query: 301 gttatagactgactcatgggtaataagctttagaggaagagaggcagtcatgctggtttg 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 297 gttatagactgactcatgggtaataagctttagagggagagaggcagtcatgctggtttg 238
Query: 361 agttaggcatggaaagcagccacaggaagcacctaaa 397
||||||||||| |||||||||||||||||||||||||
Sbjct: 237 agttaggcatgcaaagcagccacaggaagcacctaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 793
Length adjustment: 9
Effective length of query: 388
Effective length of database: 784
Effective search space: 304192
Effective search space used: 304192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
