BAC Information

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BAC

Clone NameMSMg01-352M05
Chromosome2 (Build37)
Map Location 127,195,432 - 127,195,720
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b
Downstream geneA530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M05.T7 (MSMg01no352_m05.b1)MSMg01-352M05.TJ (MSMg01no352_m05.g1)
ACCAG463809AG463810
length763829
length of high quality
(start - end)
319 (53 - 371)289 (89 - 377)
definitionCHROMAT_FILE: MSMg01no352_m05.b1 PHD_FILE: MSMg01no352_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005CHROMAT_FILE: MSMg01no352_m05.g1 PHD_FILE: MSMg01no352_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATACAGTAGCGAAGCCTTATGAGTGTCACGAATGTGGG
AAGGCCTTCAGCCAGAGCACGTTCCTCACCCAGCATCAGGTCGTTCACAC
TGGAGAGAAACCCTACAAGTGTAACGAATGTGGCAGAGCTTTTAGTGACT
GCTCAGGCCTCCTTCAGCACCAGAGAACTCACACTGAGGAGAGGCCTTAT
GAGTGCAATGAATGTGGGAAAGCCTTCGGCTACTGCTCCGCCCTGACACA
GCACCAGAGAACTCACACTGGGGATATTTTCTATAAATTTGGTGACTGTG
CCAAAGCCCTTATTTGGTATCAGAGAACACACACTGGAGAGAAGCCTTAC
AAATGCTAGGACTGTGAAAGAGCCCCCACCCAGAGCTCATCTCTTACAAA
ACACCAGAAAACTCACACTGGAGAAAAACGCTACAAGTGTAAAGAATGTG
GAAAAGTTTTTATTTCAGAGTTCTATCTCTTTCTCAGCATCCCATAACTT
CATACTGTAGGTTATACCTTGGCTTATGGACTGGCCTGTTTTGAGCGTTC
AGCTCATGGCTCATATCCTCATTTTCCTCCCTGTATTATTGTACTACGTT
CTCCGGCTATCCTTTTTTTTTTTCCTTTTTCTCCCCTCTCCCTTCTCTCT
TCCCCTCCCTCTCTCTTCCTTTTCGCTCCTCCCCCCTTTTTTACCGGCTC
TCCGTCTCTTCTN
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATTCCT
ATTTAGAGCATCCTGGACCACCTGCTCAGAACAGGAGGCTCTGGAAACAA
GGGAAGTCTTGTCGGTATTCAGGCCCAAGCCCTGTGTGGCTTCCATTGGG
CACATGTGTGCAAGGAAAGTCACCTGAGGACCAGCCTGTAAGTGGGGCAG
CTGCTGGCTGGGAGGAGCTTCTGGCCCAGCTAGAGCTGATACAGGACAAC
CTTTGGCTTCCCTACTGAGACCGGGAAATCTTCTCTCAGGACCTGGTCAC
TGTGGGTGGTGGGGCTGGTGTGGGGCTTGNGTTTCCNTGATATCTCCTTG
CCCAGGTGGTTTGTCCTTCCCCCCCGCCCTGCTTTCGCTACTACTTCATT
TCCTTTGATATTTTCCTTCCCCCCCTTCTCTTTCCCTCCCCTCCCTTTTG
TCCGTCCTTTTTCCCCCTTCCTTTCCTTTTCCTTCCTTTTCTCCCTTTCC
TCCCTTTTCTCCCCCTCCCCATTCTTTCCCTTTTCTTTTTCCGCTCTCCT
CCTCCCTTTCTTTTCTCCTTTTCCTTTTTCCCCTTTTCTTATCCCCCCCT
TTCTCCTCCTTCTCACTCTATAACCTCACCTGTTAATCTATTATTACCCG
TTCTCTTCTTCCCTTTTTCTTTTTTTACTTTTCACTCTATCTTTCTCCTC
TCCCCCTCTGTTTCCATCCCCTTTTCCCCTTCCCTCTCTTTTCCCTTTCT
TCCCCCTTTGTTCTTTCCCTTTTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m05.g1 MSMg01no352_m05.g1 CHROMAT_FILE:
MSMg01no352_m05.g1 PHD_FILE: MSMg01no352_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:25 2005
         (289 letters)



>mm_chr2_127195232_127195920
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgagaattcctatttagagcatcctggaccacctgctcagaacaggaggctctggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgagaattcctatttagagcatcctggaccacctgctcagaacaggaggctctggaaac 260

                                                                       
Query: 61  aagggaagtcttgtcggtattcaggcccaagccctgtgtggcttccattgggcacatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggaagtcttgtcggtattcaggcccaagccctgtgtggcttccattgggcacatgtg 320

                                                                       
Query: 121 tgcaaggaaagtcacctgaggaccagcctgtaagtggggcagctgctggctgggaggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaaggaaagtcacctgaggaccagcctgtaagtggggcagctgctggctgggaggagc 380

                                                                       
Query: 181 ttctggcccagctagagctgatacaggacaacctttggcttccctactgagaccgggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctggcccagctagagctgatacaggacaacctttggcttccctactgagaccgggaaa 440

                                                            
Query: 241 tcttctctcaggacctggtcactgtgggtggtggggctggtgtggggct 289
           ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tctgctctcaggacctggtcactgtgggtggtagggctggtgtggggct 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)