BAC Information

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BAC

Clone NameMSMg01-353B12
Chromosome2 (Build37)
Map Location 25,160,102 - 25,160,453
singlet/doubletsinglet
Overlap geneGrin1
Upstream geneIl1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853
Downstream geneMan1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353B12.T7 (MSMg01no353_b12.b1)MSMg01-353B12.TJ (MSMg01no353_b12.g1)
ACCAG464057AG464058
length844813
length of high quality
(start - end)
355 (53 - 407)147 (82 - 228)
definitionCHROMAT_FILE: MSMg01no353_b12.b1 PHD_FILE: MSMg01no353_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:51 2005CHROMAT_FILE: MSMg01no353_b12.g1 PHD_FILE: MSMg01no353_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCAGCCATTCCCTTGATCAGCCTTGAATCTCTATTGT
CCTTGGATGCCTACTCTGAATTTCTGTGTTCCTAGAATATCCCAGGCACC
ACCTGCAGCAAGAACTTCCTTTTGGAGCACCAAGCATGGTGGGGAGTGAA
ATAAAATCTGCAGTATGGACAGGAAGGCGTGGAGAAGTGGAGGCAGCCAC
AACTTCAGTGACAGCGGAAGAGGTAAGGGCAGTGGTGAGAAAGGGGATGA
TTATCACAGTAAAGACAGGAAATGTGGTGCTAGGAATATGGATTTGCGAT
GGAGGTGACTAACCATATAGCTTGTCCTAGATAAGACCGGCTGGACCACC
CCTGGAAGAGTGAGCCCCGCCTCTTTCCCCCCCCCCTTTTCCCTTTCTTT
CCCCCCTTTCCTCCTCCCCTTTTTTTTTCCCTTCTATTTCCCTTTCCCCT
CTTTCTCCCTTTTACTCCCCCTTCCTTTTTTTCTCCTCCCTTTCCTCCTC
CTCTTTCCCCACCCTCTCCTTTCCCCCCTTTACTCTTCCTCCTTTTATCC
CCCCCTTTTTATCTCCCTTCCTTCCCCATTTTCCCCCCTCCTCCTTCCCC
TATTAATTTACCCCCCCCCCTCATTATCCCCTCTCCCCCCCCTCTTTTTC
CCCCCCTCCTCCCTCTTTTCCTTTTTTTACTTCTCTCCCCTCCATCCTAT
TTTCCCCTATTTCCCCCCCCCCTTCCCCCCCTTTTATCCTCCGTCCCTTT
CTTCCCCGCTTCCTTCCCCCACCCCATCCTCCTTTATTCCCCCN
NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTC
AACAGTCTGTTTTACGGGAACACTTTATTAACATGACCCGTAGTTTTGGT
TCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGCAACCGTCCCGGTTT
TTCTCATCCCAGGATTTCTCGTCCCGGGTTTCGGCTCCAACTCTTACACG
CTTTCTCACGACCGGTCCGTAACACTTCCACAAACCCCACTCTTCTGCCC
CACATCTTTCCTGCTTACATCCTTACTTTTTTTCGCGCCCTTCCCATCCC
CCCCCTTTGCCTGCTTCTCTTCCCCTCCTTTCCACCGAGTTCCCCTTCGC
CCATCATCCATTCCTTCCTTGCCCCTCTTCACCTTTGCTCCCTTCTCCCT
CTTCCCCTCCTCCCCCTTTTCTTCCTTCTCTTCCTTCTCCCCTTTCCCTC
TCTTCCCCCCTCTTTCTTTCTTCCTTTTCCCCCCCCCCCTTTCCTCTTCC
CCCTTTCTTTTCCCCCTTTCCCCCCTTTCCTTCCCCATCCCTTTTTTTTT
CCCCCCTTCCCTCCCCTTTTTTTCTCCTTTTCCCCTTTCCCCTATCTTTT
CCTATTCTTATTCCCCCCTTCCCCTCCCCCTCTTTTCCCTCCTTTTTCCC
CCTTTTTCCCCCCTCTCCCTTTCGCCCTTTTCCCCTTTCTTTTACCATTT
CTCTTTTCCCCCTTTCTCTCCCTCCTTTTTCCCTTTTCCCTTCTTTTCCC
CCCTTTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_b12.b1 MSMg01no353_b12.b1 CHROMAT_FILE:
MSMg01no353_b12.b1 PHD_FILE: MSMg01no353_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:51 2005
         (355 letters)



>mm_chr2_25159899_25160653
          Length = 755

 Score =  681 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgcagccattcccttgatcagccttgaatctctattgtccttggatgcctact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcagccattcccttgatcagccttgaatctctattgtccttggatgcctact 263

                                                                       
Query: 64  ctgaatttctgtgttcctagaatatcccaggcaccacctgcagcaagaacttccttttgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgaatttctgtgttcctagaatatcccaggcaccacctgcagcaagaacttccttttgg 323

                                                                       
Query: 124 agcaccaagcatggtggggagtgaaataaaatctgcagtatggacaggaaggcgtggaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcaccaagcatggtggggagtgaaataaaatctgcagtatggacaggaaggcgtggaga 383

                                                                       
Query: 184 agtggaggcagccacaacttcagtgacagcggaagaggtaagggcagtggtgagaaaggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtggaggcagccacaacttcagtgacagcggaagaggtaagggcagtggtgagaaaggg 443

                                                                       
Query: 244 gatgattatcacagtaaagacaggaaatgtggtgctaggaatatggatttgcgatggagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatgattatcacagtaaagacaggaaatgtggtgctaggaatatggatttgcgatggagg 503

                                                               
Query: 304 tgactaaccatatagcttgtcctagataagaccggctggaccacccctggaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgactaaccatatagcttgtcctagataagaccggctggaccacccctggaa 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)