BAC Information

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BAC

Clone NameMSMg01-353C17
Chromosome2 (Build37)
Map Location 127,045,913 - 127,221,176
singlet/doubletdoublet
Overlap geneAscc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b
Upstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408
Downstream geneA530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353C17.T7 (MSMg01no353_c17.b1)MSMg01-353C17.TJ (MSMg01no353_c17.g1)
ACCAG464112AG464113
length751762
length of high quality
(start - end)		537 (54 - 590)440 (83 - 522)
definitionCHROMAT_FILE: MSMg01no353_c17.b1 PHD_FILE: MSMg01no353_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:57 2005CHROMAT_FILE: MSMg01no353_c17.g1 PHD_FILE: MSMg01no353_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,220,644 - 127,221,176)(127,045,913 - 127,046,352)
sequence
NNNAATGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTGGTCCTCCTGCCTCTGCTTTCTCAGAACTGCATAC
ACAGGCATGAGTCACCATGAAAGGGTTTGGAAGCCTAGATTTCCTGAGTC
CCTTTATAGACCCCTGTGCCCCAAGCAAAAGCCCAAGTGGAACCTTCTAT
TTTCCACTGGCATGAAGTGTCATCAATTAATTCACACCTGTAGGCCATTC
TTGTCATCTCCCATGCCTGTGTGCAGTGAAATTTACATGGAAACACTTGT
GCCCGAACAAGGCCCACTCCTGTCCTCATCACTTTGGTAGAGACAAAGAA
TACACCTTGTTCCAGGCCACACCATGTGCAAGGGGCTCACAGAGCCCAAA
GCCCCTTACACAGATCTGGGGCTGCCATGGATGATGAGAAACCCTGCTGA
AGCCAGCACACCCTGAGTCAACACCAGCTCTCCTGGCAAGCACTGCACAA
TGTCACTCTAATTAGGAGACAGCATTTGGAGGCCGCCAAGGCACTCACAG
CAAACCCCTTCCCTCCCTGTCCCAGTTCAGCCTTTTGCAGAATGTGGTCA
GCCATTGACCTCCCATAANGTTATGTGAAGAGAAAGGGATGACAGGCCTG
ATGCCAAGATCTGACCAGTCCGAGGCCTAAAACAAAAAACCCCTCCCGTC
TACCCCTTTTCTGAGATCCACCAACCTTGACTGGCTTTCTCGGGGCAAAG
N

TTAATTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGTAGACCAGGCTG
GCCTTGAACTCACAGAGATCCACCTGCCTCTGCCTCCTGAGTGCTGGGAT
TAAAAAGTGTGTGCCACCATGCCTAGCTTTCCTTAAGGCTCTTCTACGTG
CATTTTCTTCATAAGAGTCACTGTGAGCTTTGCTGTTGCCATTAAAACCA
TAATCTGCATGTAACGGAAGCCTCTTAGACATGCATGCTGTTTGCCACAT
GCCCCATTGCTTTCTATATCTGATTTTTTTTTTTTTTTAATTTGGCTTTT
GGGAAAGACTCTCTATGTAGTCCTGGTTATCTTGGAACTTGTTCTATAGA
ATATGAAATATTTTGAATCAAATGAAAACACACAAAAATAATTTTGTCCT
CCAAGACGATAGAAATGTTTCTTTATAAAATAATCCATTGTCACAAAGGA
TAAGTAAGGAATTGGGACTTTGCATTCTCTTTACATAGAAGTATCTACAG
GGGAGTGAACTTTGAGCCTGACGGGTGAAACTGGTTTTGTGGTTTTGCTT
TTTGGAAATAAATGCCTGGGTTTATTTTCTGGCGAGTTCCCTCGTGTCTG
TGTCTCCCTCCTTCCCCCCCCTAATACACTAACCCTAATTATACCTTACA
ACACCCAACATACCGCTCCCCCCCTCTTTCTTTCCTGACCTTTTACCATT
CTTCTTTCCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_c17.b1 MSMg01no353_c17.b1 CHROMAT_FILE:
MSMg01no353_c17.b1 PHD_FILE: MSMg01no353_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:57 2005
         (537 letters)



>mm_chr2_127220440_127221376
          Length = 937

 Score = 1000 bits (517), Expect = 0.0
 Identities = 529/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggtcctcctgcctctgctttctcagaactgcatacacaggcatgagtcacca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaattcttggtcctcctgcctctgctttctcagaactgcatacacaggcatgagtcacca 678

                                                                       
Query: 65  tgaaagggtttggaagcctagatttcctgagtccctttatagacccctgtgccccaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgaaagggtttggaagcctagatttcctgagtccctttatagacccctgtgccccaagca 618

                                                                       
Query: 125 aaagcccaagtggaaccttctattttccactggcatgaagtgtcatcaattaattcacac 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 617 aaagcccaagtggaaccttctattttccactggtatgaagtgtcatcaattaattcacac 558

                                                                       
Query: 185 ctgtaggccattcttgtcatctcccatgcctgtgtgcagtgaaatttacatggaaacact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgtaggccattcttgtcatctcccatgcctgtgtgcagtgaaatttacatggaaacact 498

                                                                       
Query: 245 tgtgcccgaacaaggcccactcctgtcctcatcactttggtagagacaaagaatacacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgtgcccgaacaaggcccactcctgtcctcatcactttggtagagacaaagaatacacct 438

                                                                       
Query: 305 tgttccaggccacaccatgtgcaaggggctcacagagcccaaagccccttacacagatct 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgttccaagccacaccatgtgcaaggggctcacagagcccaaagccccttacacagatct 378

                                                                       
Query: 365 ggggctgccatggatgatgagaaaccctgctgaagccagcacaccctgagtcaacaccag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggggctgccatggatgatgagaaaccctgctgaagccagcacaccctgagtcaacaccag 318

                                                                       
Query: 425 ctctcctggcaagcactgcacaatgtcactctaattaggagacagcatttggaggccgcc 484
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 317 ctctcctggcaagcactgcacaatgtcactctaattaggagacagcatatggaggccgcc 258

                                                                
Query: 485 aaggcactcacagcaaaccccttccctccctgtcccagttcagccttttgcag 537
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 257 aaggcactcacagcaaaccccttccctccctgtcccagctcagccttttgcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_c17.g1 MSMg01no353_c17.g1 CHROMAT_FILE:
MSMg01no353_c17.g1 PHD_FILE: MSMg01no353_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:57 2005
         (440 letters)



>mm_chr2_127045713_127046552
          Length = 840

 Score =  843 bits (436), Expect = 0.0
 Identities = 439/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgtagaccaggctggccttgaactcacagagatccacctgcctctgcctcctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgtagaccaggctggccttgaactcacagagatccacctgcctctgcctcctgagt 260

                                                                       
Query: 61  gctgggattaaaaagtgtgtgccaccatgcctagctttccttaaggctcttctacgtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggattaaaaagtgtgtgccaccatgcctagctttccttaaggctcttctacgtgca 320

                                                                       
Query: 121 ttttcttcataagagtcactgtgagctttgctgttgccattaaaaccataatctgcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttttcttcataagagtcactgtgagctttgctgttgccattaaaaccataatctgtatgt 380

                                                                       
Query: 181 aacggaagcctcttagacatgcatgctgtttgccacatgccccattgctttctatatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacggaagcctcttagacatgcatgctgtttgccacatgccccattgctttctatatctg 440

                                                                       
Query: 241 atttttttttttttttaatttggcttttgggaaagactctctatgtagtcctggttatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttttttttttttaatttggcttttgggaaagactctctatgtagtcctggttatct 500

                                                                       
Query: 301 tggaacttgttctatagaatatgaaatattttgaatcaaatgaaaacacacaaaaataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaacttgttctatagaatatgaaatattttgaatcaaatgaaaacacacaaaaataat 560

                                                                       
Query: 361 tttgtcctccaagacgatagaaatgtttctttataaaataatccattgtcacaaaggata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtcctccaagacgatagaaatgtttctttataaaataatccattgtcacaaaggata 620

                               
Query: 421 agtaaggaattgggactttg 440
           ||||||||||||||||||||
Sbjct: 621 agtaaggaattgggactttg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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