BAC Information

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BAC

Clone NameMSMg01-353D06
Chromosome2 (Build37)
Map Location 73,673,285 - 73,673,723
singlet/doubletsinglet
Overlap geneAtf2
Upstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneAtp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353D06.T7 (MSMg01no353_d06.b1)MSMg01-353D06.TJ (MSMg01no353_d06.g1)
ACCAG464138AG464139
length750773
length of high quality
(start - end)
466 (54 - 519)250 (84 - 333)
definitionCHROMAT_FILE: MSMg01no353_d06.b1 PHD_FILE: MSMg01no353_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:00 2005CHROMAT_FILE: MSMg01no353_d06.g1 PHD_FILE: MSMg01no353_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACTATTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGCCTTGGCTTGTCTAAGCTGGCTTTCAATTCAGAGA
TCCTCCTGCCTCTGCCTCAAGAGTGCTGGGATTAAAGGTGTGTGCCATGA
AGCCCTTCTGAAATTAACTTTTCAAGGACCACAGAGGCCAGTCAGGTGAC
TCAAGTGTTTGCCATCAAAACTGATAACCTGAGTTTGATCCCTGAGACTT
ACCTAGGAGAAGGACAGAGCCAGCTCTGATCTCCACACATCCATATGTAC
ACACAAAGACAATAAGTAAATAAATGTAATAATTTTTCTTAAAGCATAAA
TTTCAGTCTCCAGTTTAGTAAGCTTCTTGTCTTCTAGCAAACTAAAAATG
TGATATAGAAATAAGTAGAGACTCACAAATATCTACGTTTATCTAGTACT
TTTAAACACTGTAGAAGAATCCTCAGAATCTATGAATTTCTACAAAATTA
AACTAGGTCTCATGAAATTTAGGCTTAAGGGATTTATCACTAACTCCATA
AACCATAAATAATTATTTTTATATTACTCTTTTAATAAATGAAACTTTCC
TGAATGTTTATAATTTAAAAAGAAAAAAAAAACCCTCCTTACAGTAAGAT
GTTAATCACCTTTCCAGTTCTTGTCAGGTTTTATAAAGAGAAGATCTTTC
CCCTGTGGTTTCTTCTAAAACTTGGGCGACAACACCATACAAATTCTTTT

NNCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGCTGAGCTCAGCC
TCTGGGCAGGTGGGGAGGTGGGGAGGCGGGCAGAGGCAGAGAGGCAGAGA
GACAGATCTCTGAGTTCAAGGCCAGTCTGGTCTACAGAGAGAGTTCCAGA
ACAGCCAAGCTTAGGCAATGAAGGAACTCGTGGAAAACAGAAAGCTAATG
AAGATGTATTTGAACCCAGAGGCCATGTTCCAGCCGCAGCAAGCAACAGT
ATTTAGCCTTTGGCCACATGGCTCTGGTTTAGATTCTAGGAGAGAAGAAA
AGTTAGGGAATCTCCCTCCTCTTCAAAGGAAAGCTGTTGAGTCCAAGCAT
GTGCTCGTCTGTCCCTGTCTGACGGTTTATACAGTCCCTTGCTCGAATCT
ATAACTATCTTGCCTGTCTTGCTTTTGCCCTTTCCCTTATTGATCCCCAT
TCCTTATTTCTGTTCTCCCCCCCCCTTTCCTTTTCCCCTTTTTTTTCCCC
CTTTTCCCCTTATTATACCCATTCCTTCTTTTCCTTCTCCTTCCTTCCTT
TTTTTCCCCTTTTCCCTTTTCCCTTTTTTTCCCATTCCTTTGTCCCTTCC
CTTTCCTTTTTTTCCCCTTTTTCCCCTTTTTTTCCCTTCCCTTTCCCCTT
TCCCCCTTTTTTCCCTTTTCTTTCCCCCTTTCTTTCCCCCCTTATCCTTT
TCCTTTCTTCCTCCTACTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_d06.b1 MSMg01no353_d06.b1 CHROMAT_FILE:
MSMg01no353_d06.b1 PHD_FILE: MSMg01no353_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:00 2005
         (466 letters)



>mm_chr2_73672858_73673723
          Length = 866

 Score =  818 bits (423), Expect = 0.0
 Identities = 435/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 28  gctggctttcaattcagagatcctcctgcctctgcctcaagagtgctgggattaaaggtg 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gctggctttcaattcagagatcctcctgcctctgcctcaagagtgctgggattaaaggtg 807

                                                                       
Query: 88  tgtgccatgaagcccttctgaaattaacttttcaaggaccacagaggccagtcaggtgac 147
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tgtgccaccaagcccttctgaaattaacttttcaaggaccacagaggccagtcaggtgac 747

                                                                       
Query: 148 tcaagtgtttgccatcaaaactgataacctgagtttgatccctgagacttacctaggaga 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcaagtgtttgccatcaaaactgataacctgagtttgatccctgagacttacctaggaga 687

                                                                       
Query: 208 aggacagagccagctctgatctccacacatccatatgtacacacaaagacaataagtaaa 267
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aggacagagccagctctgacctccacacatccatatgtacacacaaagacaataagtaaa 627

                                                                       
Query: 268 taaatgtaataatttttcttaaagcataaatttcagtctccagtttagtaagcttcttgt 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taaatgtaataatttttcttaaagcataaatttcagtctccagtttagtaagcttcttgt 567

                                                                       
Query: 328 cttctagcaaactaaaaatgtgatatagaaataagtagagactcacaaatatctacgttt 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 566 cttctagcaaactaaaaatgtgatatagaaataagtagagactcacaaatatctatgttt 507

                                                                       
Query: 388 atctagtacttttaaacactgtagaagaatcctcagaatctatgaatttctacaaaatta 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atctagtacttttaaacactgtagaagaatcctcagaatctatgaatttctacaaaatta 447

                              
Query: 448 aactaggtctcatgaaatt 466
           |||||||||||||||||||
Sbjct: 446 aactaggtctcatgaaatt 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)