BAC Information

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BAC

Clone NameMSMg01-353J01
Chromosome2 (Build37)
Map Location 69,285,007 - 69,432,962
singlet/doubletdoublet
Overlap geneLrp2
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9
Downstream geneBbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353J01.T7 (MSMg01no353_j01.b1)MSMg01-353J01.TJ (MSMg01no353_j01.g1)
ACCAG464411AG464412
length747748
length of high quality
(start - end)		650 (50 - 699)563 (80 - 642)
definitionCHROMAT_FILE: MSMg01no353_j01.b1 PHD_FILE: MSMg01no353_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:28 2005CHROMAT_FILE: MSMg01no353_j01.g1 PHD_FILE: MSMg01no353_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,285,007 - 69,285,652)(69,432,400 - 69,432,962)
sequence
NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACACCTCTGTCGAATGACAAGCCCATATCTGAATTCCGTA
TCACATCTAAAAAGAAGTTAATGCTATACTGCTTATTTCCTTTAACTAAA
CCATCTTTCAGTGAAAGTCCACTTGAATAGAAAATATTGCTCTAAATACA
GGCACAGGCAACAAGAGAAAGCCTCAGTTAGCCCAAGTCAAACTTGGAAA
ATCTTGAGCCTCCTAAAGCTGTTTACATACCAGTCTCTGTGTCGAAATCT
GCCACCTGGCTTACCAAATTGTATCCAAAGCTTAATAAAGTCACTTCATT
TTGACAATCACTCCAAGTCCCTCTGAAAGGGTGAGATTAGTGGCAAGCCA
AGTCAGTGTGATCAGTTAGTAACTATCAAAAAGTCTTCTGGATGCCTGGG
GTATGTATGGTGGGGGCAATGCAGGAGGGAGTCATGTAATACCCAAGGAG
TTGAAAACACATAACCAGTTACACGCTCTCAGTGTTTAAAGAGCTCCCTC
AGAGGCCACTGGGACGACCTGAGTTCCATGTCTAGAGCCTATGGAAAGAT
GAAAGGAAAGAACCATACCATACAATTGTACTCTGCTGTACACACACAGA
GGCACATAGACTATGGCATGCCTGGGTACACATACACACAGTAGCTAGTT
GACTGATTGAAAGAGGTCAGACTGTGTCAAAAATAGCACAACAGGTG

NTTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGTAGTCCAGACAACCT
TGCAGGTGGTGATGGCCTTTCCTGGGGTTTCTGAGTGGCTGGAATTACAG
ATCTGCACCACCAGGCCCAGCCTCAAACCTTGCTAGACTTCCTTTTGGGT
CTGAACATTTATTGAACATGCGTTATGTGCTAAGTATAATCGAGAATATT
GTCTTTTTAACATTTTATTTACCATTGTCACGAGTATGAATGGCATTGGG
AGGCTAGAGGCACACTCAGGCTCAGGGAACACAAGCCACAGCATGTGTAT
TGTGGAGCTGGCTGTCTCCCTTCGTCTTTGCATGGGGTCCACAGAGCTAA
TTTAGGCCTCCAGGCTTATGCTACTGGAAGAGCCATCTCAGTAGCCCTGA
GCTAAAAGTTTTATCAGACAGCAAGCAAAATCCCAGCTAGCAAGTGTTCA
ATTCAGTAAATCTTGTTGCTCATGTTGAGGTGGTTTGAATAGAAATGGCA
CTGACAGACAGCAATAAAACTCTAAACCAAACACAATACAAATTAAACAC
CTGTCTTAGTCAGGGTTTCTATCCCTGCACAGACATCAGGACCAAGGAGC
ACACNATACAAAATAAACACCTGGCTTAGTCAGAGGTTCTATCCCTGGCC
AGACACCAGGAACAAGGAGCAAGCTGGGGAGGAAAAGGGCTACTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_j01.b1 MSMg01no353_j01.b1 CHROMAT_FILE:
MSMg01no353_j01.b1 PHD_FILE: MSMg01no353_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:28 2005
         (650 letters)



>mm_chr2_69284803_69285852
          Length = 1050

 Score = 1195 bits (618), Expect = 0.0
 Identities = 639/646 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacacctctgtcgaatgacaagcccatatctgaattccgtatcacatctaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacacctctgtcgaatgacaagcccatatctgaattccgtatcacatctaaaaa 264

                                                                       
Query: 65  gaagttaatgctatactgcttatttcctttaactaaaccatctttcagtgaaagtccact 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagttaatgctacactgcttatttcctttaactaaaccatctttcagtgaaagtccact 324

                                                                       
Query: 125 tgaatagaaaatattgctctaaatacaggcacaggcaacaagagaaagcctcagttagcc 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaatagaaagtattgctctaaatacaggcacaggcaacaagagaaagcctcagttagcc 384

                                                                       
Query: 185 caagtcaaacttggaaaatcttgagcctcctaaagctgtttacataccagtctctgtgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 caagtcaaacttggaaaatcttgagcctcctaaagctgtttacataccagtctctgtgta 444

                                                                       
Query: 245 gaaatctgccacctggcttaccaaattgtatccaaagcttaataaagtcacttcattttg 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagatctgccacctggcttaccaaattgtatccaaagcttaataaagtcacttcattttg 504

                                                                       
Query: 305 acaatcactccaagtccctctgaaagggtgagattagtggcaagccaagtcagtgtgatc 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaagcactccaagtccctctgaaagggtgagattagtggcaagccaagtcagtgtgatc 564

                                                                       
Query: 365 agttagtaactatcaaaaagtcttctggatgcctggggtatgtatggtgggggcaatgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agttagtaactatcaaaaagtcttctggatgcctggggtatgtatggtgggggcaatgca 624

                                                                       
Query: 425 ggagggagtcatgtaatacccaaggagttgaaaacacataaccagttacacgctctcagt 484
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcggcagtcatgtaatacccaaggagttgaaaacacataaccagttacacgctctcagt 684

                                                                       
Query: 485 gtttaaagagctccctcagaggccactgggacgacctgagttccatgtctagagcctatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtttaaagagctccctcagaggccactgggacgacctgagttccatgtctagagcctatg 744

                                                                       
Query: 545 gaaagatgaaaggaaagaaccataccatacaattgtactctgctgtacacacacagaggc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaaagatgaaaggaaagaaccataccatacaattgtactctgctgtacacacacagaggc 804

                                                         
Query: 605 acatagactatggcatgcctgggtacacatacacacagtagctagt 650
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acatagactatggcatgcctgggtacacatacacacagtagctagt 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_j01.g1 MSMg01no353_j01.g1 CHROMAT_FILE:
MSMg01no353_j01.g1 PHD_FILE: MSMg01no353_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:28 2005
         (563 letters)



>mm_chr2_69432241_69433203
          Length = 963

 Score = 1081 bits (559), Expect = 0.0
 Identities = 562/563 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcagtagtccagacaaccttgcaggtggtgatggcctttcctggggtttctgagtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 attcagtagtccagacaaccttgcaggtggtgatggcctttcctggggtttctgagtggc 663

                                                                       
Query: 61  tggaattacagatctgcaccaccaggcccagcctcaaaccttgctagacttccttttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tggaattacagatctgcaccaccaggcccagcctcaaaccttgctagacttccttttggg 603

                                                                       
Query: 121 tctgaacatttattgaacatgcgttatgtgctaagtataatcgagaatattgtcttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tctgaacatttattgaacatgcgttatgtgctaagtataatcgagaatattgtcttttta 543

                                                                       
Query: 181 acattttatttaccattgtcacgagtatgaatggcattgggaggctagaggcacactcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acattttatttaccattgtcacgagtatgaatggcattgggaggctagaggcacactcag 483

                                                                       
Query: 241 gctcagggaacacaagccacagcatgtgtattgtggagctggctgtctcccttcgtcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 482 gctcagggaacacaagccacagcatgtgtattgtggagctggctgtctcccttagtcttt 423

                                                                       
Query: 301 gcatggggtccacagagctaatttaggcctccaggcttatgctactggaagagccatctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcatggggtccacagagctaatttaggcctccaggcttatgctactggaagagccatctc 363

                                                                       
Query: 361 agtagccctgagctaaaagttttatcagacagcaagcaaaatcccagctagcaagtgttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtagccctgagctaaaagttttatcagacagcaagcaaaatcccagctagcaagtgttc 303

                                                                       
Query: 421 aattcagtaaatcttgttgctcatgttgaggtggtttgaatagaaatggcactgacagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aattcagtaaatcttgttgctcatgttgaggtggtttgaatagaaatggcactgacagac 243

                                                                       
Query: 481 agcaataaaactctaaaccaaacacaatacaaattaaacacctgtcttagtcagggtttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agcaataaaactctaaaccaaacacaatacaaattaaacacctgtcttagtcagggtttc 183

                                  
Query: 541 tatccctgcacagacatcaggac 563
           |||||||||||||||||||||||
Sbjct: 182 tatccctgcacagacatcaggac 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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