BAC Information

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BAC

Clone NameMSMg01-353L16
Chromosome2 (Build37)
Map Location 121,241,071 - 121,407,684
singlet/doubletdoublet
Overlap genePdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
Upstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353L16.T7 (MSMg01no353_l16.b1)MSMg01-353L16.TJ (MSMg01no353_l16.g1)
ACCAG464537AG464538
length759771
length of high quality
(start - end)		432 (55 - 486)419 (82 - 500)
definitionCHROMAT_FILE: MSMg01no353_l16.b1 PHD_FILE: MSMg01no353_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:41 2005CHROMAT_FILE: MSMg01no353_l16.g1 PHD_FILE: MSMg01no353_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(121,241,071 - 121,241,498)(121,407,298 - 121,407,684)
sequence
TTTCTTTCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCGTGTTCTCTCCGAATTTATCATAGTTACATAATGGT
GCTGTTAACTGAGGGGGTGTCGCTTGGGTCTGGCTTCTTTGTCTGAAGGA
GGTCATACAATTGAAGAATTGTGGGCTCTTACACAATTAGAGTTTTTAGT
CAAGGCTTTGGAATATGGTTCAGTGCTTGCCTAGCATGTCCAATCCCCAT
TGAAACACACACACATGAGAACATATATATTCTTAAGAAACAAGTCTCTG
TACACTCTAGGCTGACCTCTTCTTACTCTAGCCTCTTTTTTTTTTCTTTT
TCTTTTGAGATAGGGTCTCCTATTGCCTAGTTAGCCTTCATTTCATGATC
CTTTTATTCTGAATGCCCCAGGCACCTGACTTCAGACTTGTCTTTCTACT
AAAAATTGTTGTGCCTGCTTTCCACAAGACTACATATCCCATCGTACATT
GAGCGATTTAAGAGTTGCGTGCATTTCTGCTGTGGTGNCTGCTTTTAATT
GGTTGAGAAATAAAGGCATCTTCCCCTTTGTCCGTTAGAAAGATTGGTTT
TTTGAGGAGGCCGTTTTTATTGCACGAAACCTCCTGGTAAACCCATTCCC
ACATTTCCCATAAACCTCCCATTTTCATCATGTGGCCCAATTTTTTTTCA
ATTTCGCCATTTGCCCGTCCTTTCCTCCCGCTCCAAACCCACACATCCCC
TTTCCTGGG

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCACTGGCATCTGAA
ATCCCAGACTTGGCACTCAGCATGATAGGTGGCTCGCCCAGACAGTACAG
CATCAGCAGTAAGAAGAGAGGCCTGCCTCAAGGCCAGCGGTGGGGTTCAG
CAGGGAAAGGCACTTGCTGACAAGCCTGGGGGTCTGAGTTCAAACCCTGG
CACCACATGGTGGAAGGAAAGAACCAACTCTCACGAAGCTGTCCTCCGAC
CCCAATGTGCACGTAAATAGAAAATAAAATCTTTGTCTTAGAAATGAGTG
TGTGCAGCAGACTGCTCTGTAATTCCTTCCTGCCCCTGGGTCTCACTCAA
CCACCATTCTTAGGGGCATGAAATAACCAGAGGCAGAAAGGAACCATACA
GTTTCTCTTGGAAGTGCCACTGGGTTGGATACCAATAATTGAACAGAGTA
CCCTATTCTAGCTCTTTAACCTTAACAAAATCACCCCACTGTTTTCACTA
TAAATTCTTAGGGTTATCGAATGGGACCCTTAATTATTGTGGTTTTTGAA
ATTAATACCTTAACCGGTTTCTGTAAGTTTATTTTTGTTACCCCAAAACA
TGTCAATAAGGCCCCCTTCTACCGTCAATCCCCCTTTCCCTTCCCTTTAT
ACCCTTAACAACCCTTTTTTTATCCCTTATTCTTCCCCTTATATCGTTCC
CCTCTTTTCCCCCTTCATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_l16.b1 MSMg01no353_l16.b1 CHROMAT_FILE:
MSMg01no353_l16.b1 PHD_FILE: MSMg01no353_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:41 2005
         (432 letters)



>mm_chr2_121240867_121241698
          Length = 832

 Score =  828 bits (428), Expect = 0.0
 Identities = 428/428 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgtgttctctccgaatttatcatagttacataatggtgctgttaactgagggggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgtgttctctccgaatttatcatagttacataatggtgctgttaactgagggggt 264

                                                                       
Query: 65  gtcgcttgggtctggcttctttgtctgaaggaggtcatacaattgaagaattgtgggctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcgcttgggtctggcttctttgtctgaaggaggtcatacaattgaagaattgtgggctc 324

                                                                       
Query: 125 ttacacaattagagtttttagtcaaggctttggaatatggttcagtgcttgcctagcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacacaattagagtttttagtcaaggctttggaatatggttcagtgcttgcctagcatg 384

                                                                       
Query: 185 tccaatccccattgaaacacacacacatgagaacatatatattcttaagaaacaagtctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccaatccccattgaaacacacacacatgagaacatatatattcttaagaaacaagtctc 444

                                                                       
Query: 245 tgtacactctaggctgacctcttcttactctagcctcttttttttttctttttcttttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtacactctaggctgacctcttcttactctagcctcttttttttttctttttcttttga 504

                                                                       
Query: 305 gatagggtctcctattgcctagttagccttcatttcatgatccttttattctgaatgccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatagggtctcctattgcctagttagccttcatttcatgatccttttattctgaatgccc 564

                                                                       
Query: 365 caggcacctgacttcagacttgtctttctactaaaaattgttgtgcctgctttccacaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggcacctgacttcagacttgtctttctactaaaaattgttgtgcctgctttccacaag 624

                   
Query: 425 actacata 432
           ||||||||
Sbjct: 625 actacata 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_l16.g1 MSMg01no353_l16.g1 CHROMAT_FILE:
MSMg01no353_l16.g1 PHD_FILE: MSMg01no353_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:41 2005
         (419 letters)



>mm_chr2_121406866_121407684
          Length = 819

 Score =  748 bits (387), Expect = 0.0
 Identities = 387/387 (100%)
 Strand = Plus / Minus

                                                                       
Query: 33  cactcagcatgataggtggctcgcccagacagtacagcatcagcagtaagaagagaggcc 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 cactcagcatgataggtggctcgcccagacagtacagcatcagcagtaagaagagaggcc 760

                                                                       
Query: 93  tgcctcaaggccagcggtggggttcagcagggaaaggcacttgctgacaagcctgggggt 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgcctcaaggccagcggtggggttcagcagggaaaggcacttgctgacaagcctgggggt 700

                                                                       
Query: 153 ctgagttcaaaccctggcaccacatggtggaaggaaagaaccaactctcacgaagctgtc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctgagttcaaaccctggcaccacatggtggaaggaaagaaccaactctcacgaagctgtc 640

                                                                       
Query: 213 ctccgaccccaatgtgcacgtaaatagaaaataaaatctttgtcttagaaatgagtgtgt 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctccgaccccaatgtgcacgtaaatagaaaataaaatctttgtcttagaaatgagtgtgt 580

                                                                       
Query: 273 gcagcagactgctctgtaattccttcctgcccctgggtctcactcaaccaccattcttag 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcagcagactgctctgtaattccttcctgcccctgggtctcactcaaccaccattcttag 520

                                                                       
Query: 333 gggcatgaaataaccagaggcagaaaggaaccatacagtttctcttggaagtgccactgg 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gggcatgaaataaccagaggcagaaaggaaccatacagtttctcttggaagtgccactgg 460

                                      
Query: 393 gttggataccaataattgaacagagta 419
           |||||||||||||||||||||||||||
Sbjct: 459 gttggataccaataattgaacagagta 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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