BAC Information

Click to search

BAC

Clone NameMSMg01-354D07
Chromosome2 (Build37)
Map Location 56,377,548 - 56,378,231
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354D07.T7 (MSMg01no354_d07.b1)MSMg01-354D07.TJ (MSMg01no354_d07.g1)
ACCAG464892AG464893
length7371,494
length of high quality
(start - end)		686 (52 - 737)---
definitionCHROMAT_FILE: MSMg01no354_d07.b1 PHD_FILE: MSMg01no354_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:17 2005CHROMAT_FILE: MSMg01no354_d07.g1 PHD_FILE: MSMg01no354_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAACTCAGGACCAGCGAATGTCTGAGGAGCACCTAAAG
AACTGTTCAAACATTGTTTCCTAAGGCCACAGAAATTGTGATACCATGAT
GAAATCCCTCACGGGAGTTGCTATAATTAATTTTGTGTGAAATTTTTCAA
TTAAGTCAAACTTTTCATCGAGTACATCACAGTAAATTCAAGGTAAAATA
AGTTGTTCAAATATCCTACTCTGCTGAAAGAACATGGGTGTTTATAAGTT
TAAATAACTAGATCTTCCTGGAAAAGCACATTGATAATTTGAATTATTTT
AGAAAAAAAATCCTTAAAGAGGCTCAGAGAGACTGAGTTGGGACTACCGG
TTAACCATTTAATTAAGCATAACTTAGTTGTTTCTTAGTGTCTTCTCCTG
ACTTTTCCCATTATAAAATGGGAATTAAACAAAACAGAAACAGAATTTAC
AAAGTATCTTTTAAATTTGTAAGTAAATACTTGAGGGTGACTTATAAGCC
CTTATCTATTTGGCTAAATTACACTTCTTTTTCTTTAGTGTTTTATTATT
TTTTCTAAAGTTATCCTTAAAAATTAACATGTACTGGTGTCTTAAAAAAC
AAAACAGCATTTCCCTACAGTTCTGAAGGCTGGAAGTTTATGACAACATT
CTTGTCTGAACAGCCACCTCATGCTGTATTCTCACAG

NNNNNCCCACGATCACTAATTNNTTGGTGGTNTGGNNNAAATAANNTNAN
NNNNNGTTTGACTACAGAAAGACGAGGAGGGGGGGNNGANNANNGGNNGA
GAAGTTTTTTCCCCACACAAAAGAAGAGGGGGGGACGAAAGGCACGCAAC
CGACGAAGAGAAGANCAGCCTCTGTCACACCTCGAGCCACTGCTCTTCTC
TGAAGCAGCACCTAATATTCAAGTAGGAGGATATATGTTCTATAAGCAGT
ACTCTCCTTCTCGATAAATATATATTCTGCAGACTAGCGAGGGGAGCCGA
GTATACACTCTGCAATAGTATATCTTCACACTCGCACCCTCCTCATTAAT
CTGATGACGTATAGACTAGTAGCCATAGCATAGCTACAGCGTATCGCTGC
CCAGCAGAGTTAAAACGATCAATTAGAGCAGATACGAGTGATGTAATTTC
TCTGAACTTAGTGGACCATGTAGTTATGTATTATATGATGCAGTCATTGT
GTGTATTAAGACGAGGTAGAGTAAGGAGAGTCTCGTAGAGATCATAGATA
CATATAGCACACACATTTGTTTCTCTTCCTATCTCCTACTGTAACATCTC
ACTGCCTCCGCAGCCCAGCTTATCTATATAAGTTTCCATATATAATGTTT
TATACAACCACGCATGCACCCGATATCAAATAGCCAGCATTAAGTGTCTC
ACTATCTACTCCAGTTGTCTTTATATCATGTATATTCCACAATGCTCATC
AAACCTCCATGCACACTCANATAATAATCATTAGTAGAACAGAAATACAC
CCGCCACAACAGCTCTGACGAAGTCATACTCTATNCCTAGCATCACTCTA
CCAATACATAACATAATAATCAGACTATCTATATACACATGCCTCTACTC
ACCGTCACTTCTGCCTATTAAATAATCTCGTCAGCTATATCATTACATCT
CTACTCTAACATACACTTGATACTGCTACTATGCTGTAGTCTACTAATCT
ACAGAACATACATCATGGAATGTAACTGATCGTATAGACACTGCTATTCG
CACACACACATACATTATATATATAGTTAATCATCTACACTACTCCGTAT
CATATGCTGCACATCAATACCGCTACTCGACTATTATGCACCTCTTCATG
TCTCTAACTTATACTGTCGCTATCTACATCAGACTGCTGACCACTGACTC
AGTGTAAACATGACTGATACTCTTACGCGCTACGCCTGCGCGCGCTATAC
AATTATCAGCTACACACTGACAACAGTACCACACATGACGACCGACCGTA
CACCACCTCTTCTATCTCTACACAGATGATATAGTGAAGACAGTATTACA
TCAGTGTTTCATATATCCTCATCNATCTGTTCAATACTCATACCCCACAT
CATATGCAATCTAATAATCGATAATATCTATCCTCTGTCCGTACATCATC
CTAAGTGTCACTCTCTCTCCTCTATCTGATCATCTCATCTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_d07.b1 MSMg01no354_d07.b1 CHROMAT_FILE:
MSMg01no354_d07.b1 PHD_FILE: MSMg01no354_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:17 2005
         (686 letters)



>mm_chr2_56377344_56378430
          Length = 1087

 Score = 1276 bits (660), Expect = 0.0
 Identities = 678/684 (99%), Gaps = 2/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaactcaggaccagcgaatgtctgaggagcacctaaagaactgttcaaacatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaactcaggaccagcgaatgtctgaggagcacctaaagaactgttcaaacatt 264

                                                                       
Query: 65  gtttcctaaggccacagaaattgtgataccatgatgaaatccctcacgggagttgctata 124
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 gtttcctaaggccacaggaattgtgataccatgatgaaatccctcatgggagttgctata 324

                                                                       
Query: 125 attaattttgtgtgaaatttttcaattaagtcaaacttttcatcgagtacatcacagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attaattttgtgtgaaatttttcaattaagtcaaacttttcatcgagtacatcacagtaa 384

                                                                       
Query: 185 attcaaggtaaaataagttgttcaaatatcctactctgctgaaagaacatgggtgtttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attcaaggtaaaataagttgttcaaatatcctactctgctgaaagaacatgggtgtttat 444

                                                                       
Query: 245 aagtttaaataactagatcttcctggaaaagcacattgataatttgaattattttag-aa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 aagtttaaataactagatcttcctggaaaagcacattgataatttgaattattttagaaa 504

                                                                       
Query: 304 aaaaaatccttaaagaggctcagagagactgagttgggactaccggttaaccatttaatt 363
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaaatccttaaagaggcttagagagactgagttgggactaccggttaaccatttaatt 564

                                                                       
Query: 364 aagcataacttagttgtttcttagtgtcttctcctgacttttcccattataaaatgggaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagcataacttagttgtttcttagtgtcttctcctgacttttcccattataaaatgggaa 624

                                                                       
Query: 424 ttaaacaaaacagaaacagaatttacaaagtatcttttaaatttgtaagtaaatacttga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaaacaaaacagaaacagaatttacaaagtatcttttaaatttgtaagtaaatacttga 684

                                                                       
Query: 484 gggtgacttataagcccttatctatttggctaaattacacttctttttctttagtgtttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggtgacttataagcccttatctatttggctaaattacacttctttttctttagtgtttt 744

                                                                       
Query: 544 attattttttctaaagttatccttaaaaattaacatgtactggtgtcttaaaaaacaaaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attattttttctaaagttatccttaaaaattaacatgtactggtgtcttaaaaaacaaaa 804

                                                                       
Query: 604 cagcatttccctacagttctgaaggctggaagtttatgacaacattcttgtctgaacagc 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 805 cagcatttccctacagttctgaaggctggaagtttatgacaacattcttgtccgaacagc 864

                                   
Query: 664 cacct-catgctgtattctcacag 686
           ||||| ||||||||||||||||||
Sbjct: 865 caccttcatgctgtattctcacag 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space:   728052
Effective search space used:   728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |