BAC Information

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BAC

Clone NameMSMg01-354G22
Chromosome2 (Build37)
Map Location 21,347,896 - 21,348,407
singlet/doubletsinglet
Overlap geneGpr158
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneLOC637235, Myo3a, LOC100041703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354G22.T7 (MSMg01no354_g22.b1)MSMg01-354G22.TJ (MSMg01no354_g22.g1)
ACCAG465062AG465063
length782785
length of high quality
(start - end)
516 (47 - 562)394 (74 - 467)
definitionCHROMAT_FILE: MSMg01no354_g22.b1 PHD_FILE: MSMg01no354_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:34 2005CHROMAT_FILE: MSMg01no354_g22.g1 PHD_FILE: MSMg01no354_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATATAGGAAAATGAGGAAGAGGGGAAACTTAGAAGCAGCTTCC
ACTGCTATTTTTGTTGGAAAGTAGCATACTGCATGTCTGATTGGAGACTG
AACATGTATTTTGGAAAAATCTTAAAATAATGTGTGTGTTCACTGATACT
GATCACTCCTAGAAACATTAGCAAATTAACTTTGCTCCTCCTTTGAAAAT
ATCCAGCCAGAGGACAGAGTAAGTGAAATTGGATGGCGCCAAGTTCCCTT
TGTAGTCAAACCCTGAAATCAAAGTATAAAATCTTTGGTGCAGCCCTTTT
GGATCAGAAGCTTCCTGGAAATCCTTGCTGCAGGTTTTATAATGACATCA
AACGCTCTATGACTCTGTGCTTCCTGCTGTTTCTGGATTCAGTTCTTGCT
AGCCTTCATAGTTTCCCTAATGATTCATATCTACTTTCTCTGTCTCTTTC
TCTTCCCTTCCCCCCTTTCTCTCTGNCCAAATAGCTCTTTAACTGAGGGC
AACAACACTGACCACTCCAAACTCATAATCTAGNAGTGGCATCTGCTTTT
TTATTTTTCTCTTACATCCCCTTCAGTTTTCAGNAAATCTCTTCAACCAT
GAAGTGTTTCTTTGNATAACGGCATCTATCANGATGACTCCTCTTCCTCC
TAGCCAATAAAAGGTAAATTTTTCTACTGTGGTCCCTGAAAATTTCCAAC
TTTAATTGTGCAAAGTAATATAACGTTTTTTG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTTTAAGACTTTTATCATGA
AGGGGTGTTGTATTTCCTCAAATACTTTCGCAGCATCTAATGAGATGATC
ATGAGGTTTTTTTTTTTTTCCCCTTTGAGTTTGTTTATATAGTGAATTGC
GTTGATGGATTTCTGTATATTAAACCATCTCTGCATCCCTGAGATGAAGC
CTATTTGATCATGATAGATGATCATTTTCATATATTCTTGCATTCAGTTT
GAGAGAATTTTATTGAGTATTTTTGCATGGATATTCATAATGGAAATTGG
TCTAAATTTCTCTTTCTTTTGGGTCTTTGTACAGTGTGGGTATCAGAGTA
ATTGTGGCGTCATAAAACAAATTGGATAGTGTTCTTTCTGTTTCTAATTT
GTGGAATAGTTTGGAGAGTGTTGGTGTTAGGTTTTCTTTGAAGATCTGAT
ANAACTCTGCACTATACTATTCTGGGCTGGGTTTTTTTAAATTTTTTTGG
TAACAAGACCAAAATGCAGGTTCTATTTCTTTAGGGGTATGTGGACGCTT
TAAAGGTTTATCTCGTCTCGCTTTTATCTTGCGTTTTGTGTTTGGTGCTA
CAAATGTTCTGCTTTCCTCAGTGGTTATTTTAATACATAACCCCTTTCTC
TTACGAATTAAGCTTTTTTTCTTATTATACCTTTCTATCTTGATTTTCTT
GTTATTAGTACCATCTTCCGTTCCCCTTCCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_g22.b1 MSMg01no354_g22.b1 CHROMAT_FILE:
MSMg01no354_g22.b1 PHD_FILE: MSMg01no354_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:34 2005
         (516 letters)



>mm_chr2_21347692_21348607
          Length = 916

 Score =  953 bits (493), Expect = 0.0
 Identities = 507/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatataggaaaatgaggaagaggggaaacttagaagcagcttccactgctattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatataggaaaatgaggaagaggggaaacttagaagcagcttccactgctattt 264

                                                                       
Query: 65  ttgttggaaagtagcatactgcatgtctgattggagactgaacatgtattttggaaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgttggaaagtagcatactgcatgtctgattggagactgaacatgtattttggaaaaat 324

                                                                       
Query: 125 cttaaaataatgtgtgtgttcactgatactgatcactcctagaaacattagcaaattaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttaaaataatgtgtgtgttcactgatactgatcactcctagaaacattagcaaattaac 384

                                                                       
Query: 185 tttgctcctcctttgaaaatatccagccagaggacagagtaagtgaaattggatggcgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgctcctcctttgaaaatatccagccagaggacagagtaagtgaaattggatggcgcc 444

                                                                       
Query: 245 aagttccctttgtagtcaaaccctgaaatcaaagtataaaatctttggtgcagccctttt 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 445 aagttccctttgtagtcaaaccctgaaatcaaagtataaaacctttggtgcagccctttc 504

                                                                       
Query: 305 ggatcagaagcttcctggaaatccttgctgcaggttttataatgacatcaaacgctctat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggatcagaagcttcctggaaatccttgctgcaggttttataatgacatcaaacgctctat 564

                                                                       
Query: 365 gactctgtgcttcctgctgtttctggattcagttcttgctagccttcatagtttccctaa 424
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 gactctgggcttcctgctgtttctggattcagttcttgctagtcttcatagtttccctaa 624

                                                                       
Query: 425 tgattcatatctactttctctgtctctttctcttcccttcccccctttctctctgnccaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 tgattcatatctactttctctgtctctttctcttcccttcccccctttctctctgtccaa 684

                                           
Query: 485 atagctctttaactgagggcaacaacactgac 516
           ||||||||||||||||||||||||||||||||
Sbjct: 685 atagctctttaactgagggcaacaacactgac 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)