BAC Information

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BAC

Clone NameMSMg01-354I12
Chromosome2 (Build37)
Map Location 110,834,057 - 110,834,431
singlet/doubletsinglet
Overlap geneLOC668802
Upstream geneLgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354I12.T7 (MSMg01no354_i12.b1)MSMg01-354I12.TJ (MSMg01no354_i12.g1)
ACCAG465137AG465138
length730828
length of high quality
(start - end)
398 (70 - 467)---
definitionCHROMAT_FILE: MSMg01no354_i12.b1 PHD_FILE: MSMg01no354_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:42 2005CHROMAT_FILE: MSMg01no354_i12.g1 PHD_FILE: MSMg01no354_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATCTTACGCATTTATTATAAATCTACTCATCTTTCTTTC
ACTGTTACATGAAATAACCAAAATCTGTCTGTTTTACAAAAGTCTTTTCA
AACGGGAAATATGACATGAGGAAATGCTTGAAAGGAAAAATCTCTGCGTC
TACACATCTAATCTCTCCGTGTGTTTTTGTGTGTGGATATTAATGTATAA
TTGTGGGTTGTACCAAAGCTCACATGTGGAGGTCAACATGCAACTGAGAT
GATTATCAGTCCTTGCCTCCATTTTAATATAAAATCTTTTGTTTTGTTAC
TGTGCATGTAAGCTAATTGAGTGTCAGTCTTTGGGAATTCTGTCCCAACT
CCCATCTCTCCACAAGAGCTCTGGAATTGCAAACCAGCTATTCTAGCTGT
CCTAATATGATTCTAAGAATTCNNATTCATGTCAAGTGCTTGCGTAACAT
GGACTATTACTCACTGAGCCCTGTCCTGTCCATGTGTATGGGCCTATATT
TTTGNCTATAGCTATATCTATATGCATATCTCACTAGTCATCTATATCTA
TCTCTGTACAATCTATTGTCCTTCTCTTANCGGAAGCCCCATAANATATT
GTTCGCCTATCTCCTTTATCACTTGGTTGGAGCTACCACAAAACAATGCC
TTCTCTTATNACTCTGAATTGTCTCCANTC
CCCCCAATGCTAGTGGTAGGCTGCTCGTTCGTTTGTTCTCCCAACATTTA
CGTGTCCTATAAATTCACCCGCGTATTTCTTTTGGAACGTTCCATAGGTA
GAATGCTATTCTCTCTTTTTTTTCACTTATTTCTTCAATGTTATCCCCTT
TCCTGAACCTATCCCTCCCCTTAAGAATCCCTATCTCATTCCCTCTTCCT
CCTTCTGATTCTATGATCGTGCGCCCAAACCCATGTACTCACTCCAGCCT
CCCATCCTTCCCTTAACCAATGCTCTCTCCTCCCATTGATGCCTAAAAGG
TTCTTTCTCTGCTACAAATTTTGCTGCAGACTTGGATTCCTCCATACCTT
CTCTGGTTTATGATTTAATTCCTGCTATCTTCTTGAGCTTTACTGTTTGT
TTCGCAAATTATTACACCCCCCCCACATACCCACACAATTTTTACGCCCT
CTTTCTCTTCACTTCCCCACACCCTCCTCTTTTATTTAACTCCCTTTTCT
ATCCTCTCCACTCCTACTCTATAAATCACCTTCTCATCTCCCTAAACACT
ACACCCACTCTACCTCCCTCACACCTCCCTCTCTCCTACCTCCTTCTCTC
CTCCTCTTTCTTTATAAATCCCTTATATAATTTTCTCTTCCCACTCTTTT
ATCTCCATTTACTTCACCATCTCACCTCCCCCCCCCCCACTCCCCACACT
ATTTCAACTACAACCCCCCCCCTTTCACCCCCCTCATCATTCTCATTCTC
CACATTATTCTTTCACGCCGCTCGTATTCTCTCTTCTCCCTTTCTATCCA
CCTTCTTCCATTTCCCCCTCACCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_i12.b1 MSMg01no354_i12.b1 CHROMAT_FILE:
MSMg01no354_i12.b1 PHD_FILE: MSMg01no354_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:42 2005
         (398 letters)



>mm_chr2_110833857_110834654
          Length = 798

 Score =  665 bits (344), Expect = 0.0
 Identities = 374/398 (93%), Gaps = 23/398 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttattataaatctactcatctttctttcactgttacatgaaataaccaaaatctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttattataaatctactcatctttctttcactgttacatgaaataaccaaaatctgtc 260

                                                                       
Query: 61  tgttttacaaaagtcttttcaaacgggaaatatgacatgaggaaatgcttgaaaggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttttacaaaagtcttttcaaacgggaaatatgacatgaggaaatgcttgaaaggaaaa 320

                                                                       
Query: 121 atctctgcgtctacacatctaatctctccgtgtgtttttgtgtgtggatattaatgtata 180
           ||||||||||||||||||||||||||||          |||||||             ||
Sbjct: 321 atctctgcgtctacacatctaatctctc----------tgtgtgt-------------ta 357

                                                                       
Query: 181 attgtgggttgtaccaaagctcacatgtggaggtcaacatgcaactgagatgattatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 attgtgggttgtaccaaagctcacatgtggaggtcaacatgcaactgagatgattatcag 417

                                                                       
Query: 241 tccttgcctccattttaatataaaatcttttgttttgttactgtgcatgtaagctaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tccttgcctccattttaatataaaatcttttgttttgttactgtgcatgtaagctaattg 477

                                                                       
Query: 301 agtgtcagtctttgggaattctgtcccaactcccatctctccacaagagctctggaattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agtgtcagtctttgggaattctgtcccaactcccatctctccacaagagctctggaattg 537

                                                 
Query: 361 caaaccagctattctagctgtcctaatatgattctaag 398
           ||||||||||||||||||||||||||||| ||||||||
Sbjct: 538 caaaccagctattctagctgtcctaatataattctaag 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)