NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCGTTTAGCTTTATACCCTAATTTTTTGATAGGGTTGTTTG
TTTTTTTGGTGATTAATTTCTTGAGTTCTTTTTATATATTTTGAATATTA
GCTTAGCTCTCTATTGGATGTGGGGTTAGTGATTTTTTTCTTCAATCAGT
AGGTTGCCAATTTGTCCTATTGACTATATCCTTTACCTTACAGAAGCTTT
CCAGTTTTATAAGGTCACATTTATCAATTCTTGATCTTAGATTATGAGCC
ATTGGAATTCTGTTTAGGAAATTTCTCCCTGTGCCAATGACATCAAGGCT
CTTTCCCACTTTCTCTTTTATTAGATTCAGTGTATCTGGTTTTATGTTGA
GGTCCTTGATCCGCTTGGACTTGAGCTTTGTACAAGGTGACAAATATGGG
TCTATTTTCATTCTTCTGCATACAGACAGCCAGTTAGACCAGCACCATTT
ATTCAGTATGCTTTCCTTTTTCCATTTTTGGTGTATTTGTCAAAGATCAA
GTGATGGTAAGTATGTGGTTTTATTTCTGGGTTTTCAATTCTATTCCATT
GATCATCATGTCTGTTTCTGTAACGATACGATGCAGTTTTTTATCACTAC
TGCTCTGTATTAAAGCTTGAGGTCAGGTATGGTAGTACCCCTACCCNCAG
CAGGTCTTTTATTGTTAACAATTGCTTTAGCTATTCTGTT

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAACAGCACCATTTCTAA
AAGGATGCTGACTCATGAGCCATTCCTGTTCAAAAGCCAAGTCTTCCCTC
ACAGATAGCCATAATGGCAATGATAAATAAATATCAAATAAAGCCAAAGT
TGAGGTCCTCACCAAAGTAGTCAGTAGAAACATGATTTGACACCTGTCTT
GAGATGACACATAAGTCAACCTGTTTAGTTTTAATCTTTAGAGTGTCATT
GGATCTAATGGGAGAAACTTCTGTTTTCCAATTTTGAATGCTTTTCTGCA
AATTAAAAAAAAACTTCACAAAATGAATGTGTGTGATTAAATCTTGACAT
GTATACACCGTGGAACCATCATCACACTTATTCAAAAACACGTCCATGAC
ACCCCGAAGATCCCTTGGGCCCCACTGTCATTCTGCTTCTCTTGCCTGAT
CAACCCTACTGCTGTCCCCAGACAACTGCAGCTGTTTTCTCTCTCTAACG
TCATTTGTATTTTCGAGAATTTAAAATGACTGGAGTAAGACAAATCTACT
ATTTTTATTCTGCCTTCTGTCACTGACAATAATGTTCTTCTAGATCCGTT
ACGTGTGCCATATAGCAGTAGTTTATTTTTTTATATTGTTCCATTAAATA
ATGTTCAATGAATAAGCATATCATATTCCATTTACACATATATCAATAAA
TGCCTN

Query= MSMg01no354_n05.g1 MSMg01no354_n05.g1 CHROMAT_FILE:
MSMg01no354_n05.g1 PHD_FILE: MSMg01no354_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:06 2005
         (549 letters)



>mm_chr2_81073302_81074253
          Length = 952

 Score =  949 bits (491), Expect = 0.0
 Identities = 505/511 (98%), Gaps = 4/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   taacagcaccatttctaaaaggatgctgactcatgagccattcctgttcaaaagccaagt 62
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 510 taacagcaccatttctaaaaggatgctgactcatgagtcattcctgttcaaaagccaagt 451

                                                                       
Query: 63  cttccctcacagatagccataatggcaatgataaataaatatcaaataaagccaaagttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cttccctcacagatagccataatggcaatgataaataaatatcaaataaagccaaagttg 391

                                                                       
Query: 123 aggtcctcaccaaagtagtcagtagaaacatgatttgacacctgtcttgagatgacacat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aggtcctcaccaaagtagtcagtagaaacatgatttgacacctgtcttgagatgacacat 331

                                                                       
Query: 183 aagtcaacctgtttagttttaatctttagagtgtcattggatctaatgggagaaacttct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 330 aagtcaacctgtttagttttaatctttagagtgtcattggatctaatgggagaaagttct 271

                                                                       
Query: 243 gttttccaattttgaatgcttttctgcaaatt---aaaaaaaaacttcacaaaatgaatg 299
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 270 gttttccaattttgaatgcttttctgcaaattaaaaaaaaaaaacttcacaaaatgaatg 211

                                                                       
Query: 300 tgtgtgattaaatcttgacatgtatacaccgtggaaccatcatcacacttattcaaaaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tgtgtgattaaatcttgacatgtatacaccgtggaaccatcatcacacttattcaaaaac 151

                                                                       
Query: 360 acgtccatgacaccccgaagatcccttgggccccactgtcattctgcttctcttgcctga 419
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 acgtccatgaca-cccgaagatcccttgggccccactgtcattctgcttctcttgcctga 92

                                                                       
Query: 420 tcaaccctactgctgtccccagacaactgcagctgttttctctctctaacgtcatttgta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  tcaaccctactgctgtccccagacaactgcagctgttttctctctctaacgtcatttgta 32

                                          
Query: 480 ttttcgagaatttaaaatgactggagtaaga 510
           |||||||||||||||||||||||||||||||
Sbjct: 31  ttttcgagaatttaaaatgactggagtaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 952
Length adjustment: 10
Effective length of query: 539
Effective length of database: 942
Effective search space:   507738
Effective search space used:   507738
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)