BAC Information

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BAC

Clone NameMSMg01-354O14
Chromosome2 (Build37)
Map Location 172,638,744 - 172,824,159
singlet/doubletdoublet
Overlap geneBmp7, LOC100043751, Spo11
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
Downstream geneRae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354O14.T7 (MSMg01no354_o14.b1)MSMg01-354O14.TJ (MSMg01no354_o14.g1)
ACCAG465425AG465426
length752757
length of high quality
(start - end)		324 (75 - 398)589 (78 - 666)
definitionCHROMAT_FILE: MSMg01no354_o14.b1 PHD_FILE: MSMg01no354_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:12 2005CHROMAT_FILE: MSMg01no354_o14.g1 PHD_FILE: MSMg01no354_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,638,744 - 172,639,067)(172,823,810 - 172,824,159)
sequence
CCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACACCCCTTACCGAGATGTTCTAGTCTTTTAAAATTCTGGTTTT
GTTCCAGATAGTTCTCTGAAGTTAAAGGTAAGTAGAAACAGTAGGAAATA
AAGCCGTTTTCAAGTCCCATTCTCTAGACAGGATAGCGCTGGCATCTCTT
CCTACTCTTACACACNCGGTACAAATCTGAGATCTAATTATATAAGCCTC
TTTCATTACCAGTTTGGAACGAAGGTTTTAATCATTGAAGCCTAAGCCCC
TAGAATTTCTCCATGCTGTTTCTTTGTCTTGGAAAACAGCTTCTTTCTGC
ATTGCGCAATAGGTCCTCCCACACTGTGGCTGCGCTGTCCTCGTGCCAGC
ATCNGNTCAGNCCCCACCGCTGGGCACAGAGGTTGTTCTTGCTTCTGCCT
TGGCACAGCCCTCACCCAGGGACTCTGCTCACCANNGTGTGTTTGTATTA
CTGAACCGNGTCTCACGGCAGACTTTCTAGCCATCTGAGGAGCTCTTCAT
AGATCGCTTTGGTGTTAAACTCGAGACCAATGGAATGGCAACTCGTTACG
TTTATGCGACTTTCTGNATTTTTCCGATCATTCTGGCGTGACTAATGCCT
GATTTGTTCGATTCGTCCTGTCGACNTACACCGGTGGTCCGGTCATTGCA
CGCGCAATCCANCCCCGNCCCGCCTCGCTATNACGCCCCGTCTGCTCGAN
TT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAACTAGCCAGCACAGCACAC
CCTTAGTGAGGGCAGCTGACAGTGACCAAAGAGGCTTTACACTAACGGCC
ACAACCATCAAGCAGCAAACAGCACAGTTCCCTTTAGAGCCATGGCCCTT
GCAGCACTGCATTATAGTCCTGTGGGGTGTGCTGGATAGTTTTATGCCAA
CTTGACACAAGCTAAAGTCATCTGAGAGGAGGGAACCTCAGTTAAGAAAA
TGCCTCCATAAGATTAGGCTGTGCGCAAGACAGTAAAGCAATTCCTTAAT
TAGTGATCAGTGGTGGAGGGCCCAACCCATGGTGGATGGGGCCATCCCTG
GGTTCTATAAGAAAGCAGGCTGAGCAAGCCACAGAAAGCAAGCCAGTAAG
CAGCATCCCACCATGGCCTCTGCATCAGCTCCTGCTCCAGGTTCCTGCCC
TGACTTCCTTTGCTAATGACCTGTGATGTAGACGCCTAAGCAGAATAAAC
CCTTTCCTCCCCAGCGTGCTTTGCTTATGGTGTTAATCACGGCAGTGGCA
ACTGTAACTAAGACAGGTGGTGTTGCAGCCTATGCAGCCAGCTTCAGATA
GTTATCAACCTCGCAGGCCACGGGGAGATCATGTCGGGCAGAAAGGTCAT
CTTCCCCCCCCCCCAGCTTTAACATTCATTACCATCCACCCCCTCCATCC
CCTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_o14.b1 MSMg01no354_o14.b1 CHROMAT_FILE:
MSMg01no354_o14.b1 PHD_FILE: MSMg01no354_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:12 2005
         (324 letters)



>mm_chr2_172638544_172639267
          Length = 724

 Score =  605 bits (313), Expect = e-177
 Identities = 321/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctagtcttttaaaattctggttttgttccagatagttctctgaagttaaaggtaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctagtcttttaaaattctggttttgttccagatagttctctgaagttaaaggtaagta 260

                                                                       
Query: 61  gaaacagtaggaaataaagccgttttcaagtcccattctctagacaggatagcgctggca 120
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 261 gaaacagtaggaaataaagccgttttcaagttccgttctctagacaggatagcgctggca 320

                                                                       
Query: 121 tctcttcctactcttacacacncggtacaaatctgagatctaattatataagcctctttc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcttcctactcttacacactcggtacaaatctgagatctaattatataagcctctttc 380

                                                                       
Query: 181 attaccagtttggaacgaaggttttaatcattgaagcctaagcccctagaatttctccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaccagtttggaacgaaggttttaatcattgaagcctaagcccctagaatttctccat 440

                                                                       
Query: 241 gctgtttctttgtcttggaaaacagcttctttctgcattgcgcaataggtcctcccacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtttctttgtcttggaaaacagcttctttctgcattgcgcaataggtcctcccacac 500

                                   
Query: 301 tgtggctgcgctgtcctcgtgcca 324
           ||||||||||||||||||||||||
Sbjct: 501 tgtggctgcgctgtcctcgtgcca 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_o14.g1 MSMg01no354_o14.g1 CHROMAT_FILE:
MSMg01no354_o14.g1 PHD_FILE: MSMg01no354_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:12 2005
         (589 letters)



>mm_chr2_172823810_172824798
          Length = 989

 Score =  646 bits (334), Expect = 0.0
 Identities = 346/350 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaactagccagcacagcacacccttagtgagggcagctgacagtgaccaaagaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 attaactagccagcacagcacacccttagtgagggcagctgacagtgaccaaagaggctt 291

                                                                       
Query: 61  tacactaacggccacaaccatcaagcagcaaacagcacagttccctttagagccatggcc 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 290 tacagtaacggccacaaccatcaagcagcaaacagcacagttccctttagggccatggcc 231

                                                                       
Query: 121 cttgcagcactgcattatagtcctgtggggtgtgctggatagttttatgccaacttgaca 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 230 cttgcagcactgcattatagtcctgcggggtgtgctggatagttttatgccaacttgaca 171

                                                                       
Query: 181 caagctaaagtcatctgagaggagggaacctcagttaagaaaatgcctccataagattag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 caagctaaagtcatctgacaggagggaacctcagttaagaaaatgcctccataagattag 111

                                                                       
Query: 241 gctgtgcgcaagacagtaaagcaattccttaattagtgatcagtggtggagggcccaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gctgtgcgcaagacagtaaagcaattccttaattagtgatcagtggtggagggcccaacc 51

                                                             
Query: 301 catggtggatggggccatccctgggttctataagaaagcaggctgagcaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  catggtggatggggccatccctgggttctataagaaagcaggctgagcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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