Query= MSMg01no355_i04.b1 MSMg01no355_i04.b1 CHROMAT_FILE:
MSMg01no355_i04.b1 PHD_FILE: MSMg01no355_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:59 2005
(364 letters)
>mm_chr2_3976088_3976850
Length = 763
Score = 623 bits (322), Expect = 0.0
Identities = 349/358 (97%), Gaps = 1/358 (0%)
Strand = Plus / Plus
Query: 7 gatcagatggtgaatgaatttgtctccatcttctcctgtctacacttatcaagcctgtct 66
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 207 gatcagatggtgaatgaatttgtctccatcttctcctgtgtacacttatcaagcctgtct 266
Query: 67 ttccagctacagggatcacgtgtgacccatggtctgcactctactgatctggcagtttct 126
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct: 267 ttccagctacagggatcatgtgtgatccgtggtctgcactctactgatctggcagtttct 326
Query: 127 aaattttctttattttgcttttgttgtcctagaagtttccaagaatattgtttggggagt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaattttctttattttgcttttgttgtcctagaagtttccaagaatattgtttggggagt 386
Query: 187 gtggttcatcagctagccttgggactgggaaagaaagacactctcctcaaagctgtgcca 246
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 387 gtggttcatcagctagccttgggactaggaaagaaagacactctcctcaaagctgtgcca 446
Query: 247 ggaccatgttattaattgattccttcactgcctctcccatctttatttaatctacaggtt 306
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 447 ggaccatgttag-aattgattccttcgctgcctctcccatctttatttaatctacaggtt 505
Query: 307 ctgtatggcttgagcagagacaattactcattttattggaggacttgcctggggagct 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctctatggcttgagcagagacaattactcattttattggaggacttgcctggggagct 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 763
Length adjustment: 9
Effective length of query: 355
Effective length of database: 754
Effective search space: 267670
Effective search space used: 267670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_i04.g1 MSMg01no355_i04.g1 CHROMAT_FILE:
MSMg01no355_i04.g1 PHD_FILE: MSMg01no355_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:59 2005
(323 letters)
>mm_chr2_4158440_4159162
Length = 723
Score = 617 bits (319), Expect = 0.0
Identities = 322/323 (99%)
Strand = Plus / Minus
Query: 1 ctctcggcaaggggctgtttgccaaccttttattgagccagatggactttaaaagcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctctcggcaaggggctgtttgccaaccttttattgagccagatggactttaaaagcctgg 464
Query: 61 gcaaaagtgcaatcccaccaagggcatcgtccaccaatcccagcctctccgtgtttgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcaaaagtgcaatcccaccaagggcatcgtccaccaatcccagcctctccgtgtttgcag 404
Query: 121 ctgaggaagcagggtgctcggcttcagtttgagcctgcaggaagatgcaccagaaaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgaggaagcagggtgctcggcttcagtttgagcctgcaggaagatgcaccagaaaggga 344
Query: 181 cattgctggtcagtattggacagcatctttctaatccatggagttgccttcctaccagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cattgctggtcagtattggacagcatctttctaatccatggagttgccttcctaccagtt 284
Query: 241 ttccagattttgtcctatcacagtcgggaactgatcttaatgagataaatgggttaagtg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttccagactttgtcctatcacagtcgggaactgatcttaatgagataaatgggttaagtg 224
Query: 301 agcggcacagatatttggagaaa 323
|||||||||||||||||||||||
Sbjct: 223 agcggcacagatatttggagaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
