Query= MSMg01no355_n04.b1 MSMg01no355_n04.b1 CHROMAT_FILE:
MSMg01no355_n04.b1 PHD_FILE: MSMg01no355_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:22 2005
(348 letters)
>mm_chr2_60453128_60453875
Length = 748
Score = 601 bits (311), Expect = e-176
Identities = 320/323 (99%)
Strand = Plus / Plus
Query: 17 ggaattcaattgtattatcacaacaattttgaaacagagtatttaaaaaacatataaatg 76
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ggaattcaattgtaccatcacaacaattttgaaacagagtatttaaaaaacatataaatg 276
Query: 77 tctttctatattctgttttgaaaatacattaatttctgtaatctaactccatccattcaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tctttctatattctgttttgaaaatacattaatttctgtaatctaactccatccattcaa 336
Query: 137 tacatgtgtcctacaggccatatattatcctttcctgcccagattatatgcagttgtgtt 196
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 337 tacatgtgtcctacaggccatatattatcctttcctgtccagattatatgcagttgtgtt 396
Query: 197 taatatttgtgatgagtctttgccactagattctcattttaaataattagacatgacaga 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taatatttgtgatgagtctttgccactagattctcattttaaataattagacatgacaga 456
Query: 257 tgaaaatggaaactcaatgtgattatcagttaggagagggatttcttggatctggagatg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgaaaatggaaactcaatgtgattatcagttaggagagggatttcttggatctggagatg 516
Query: 317 agttcagagggatggagggatgg 339
|||||||||||||||||||||||
Sbjct: 517 agttcagagggatggagggatgg 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_n04.g1 MSMg01no355_n04.g1 CHROMAT_FILE:
MSMg01no355_n04.g1 PHD_FILE: MSMg01no355_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:22 2005
(458 letters)
>mm_chr2_60610324_60611182
Length = 859
Score = 857 bits (443), Expect = 0.0
Identities = 455/459 (99%), Gaps = 1/459 (0%)
Strand = Plus / Minus
Query: 1 cataga-tttttttttcattgcttaatactgattgataaaaatcccgttatggaaaaaga 59
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 catagattttttttttcactgcttaatactgattgataaaaatcccgttatggaaaaaga 600
Query: 60 ctgtaatagtggctctctacctaagggagtgttggaaacaggctgggaaatttcagttgg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 599 ctgtaatagtggctctctacctaagggagtgttggaaacaggctgggaaatttcagtttg 540
Query: 120 gttgtgtagagctgatgaccaaagtaggaactgtgctgcaggcacaaacactggtcatga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gttgtgtagagctgatgaccaaagtaggaactgtgctgcaggcacaaacactggtcatga 480
Query: 180 tcagaattggggaatttgtctcaaaatgttcttcttgtgctatcttcccaagagtagaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcagaattggggaatttgtctcaaaatgttcttcttgtgctatcttcccaagagtagaca 420
Query: 240 tgttgtccaggaagaatattcttaatggcatttgctggaaaacccctggagctgtgaatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgttgtccaggaagaatattcttaatggcatttgctggaaaacccctggagctgtgaatg 360
Query: 300 cccctgccaccttcctgccacccaacaccttatactcctccccaaggatggcagtgtgcc 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 359 cccctgccaccttcctgccacccaacaccttacactcctccccaaggatggcagtgtgcc 300
Query: 360 tgctacttcaggacacaacaggtccacccatcgttctggacctctgcagtactttgaata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgctacttcaggacacaacaggtccacccatcgttctggacctctgcagtactttgaata 240
Query: 420 agtccatgtgtacaaaggaagagtgggggttgctcatgc 458
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agtccatgtgtacaaaggaagagtgggggttgctcatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 859
Length adjustment: 10
Effective length of query: 448
Effective length of database: 849
Effective search space: 380352
Effective search space used: 380352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
