NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTACTCTAGCATTTCAATATACTGAATGCCATGGTCATATGTC
TTTGCCTTGATAGTTAATGGTGTCCCAATTAACAGCATCCTTGGCACTGG
ATGAACGTGTCTTTGAGATGTATTCAATATTGTTTCTGGCAGGACTAAGT
TCTAAGTGCTCTGTAAGAGTGATCTACCTGATAACACACCTTTCCCTGGC
TCCGTCTCCTCCTACAGTCTCAATTTCTCTTTGCTACCAGCTCTTCCTAG
GGTTGACTCATAATCATTAATATTCTCAGAAAATCTACATAAGGCATGAC
ACTTCCAAAGAAGCTGATGTGTGCAAGCCTGACAAGTGCTTCAGACTCTA
TTTTTTTTTCTTCTGCTCCATGCCATGCCTTTTCTGTCACCTTTCCTATC
CTGCCTGCCTTAAATGTACACTTGGAATCCATCTTGGAAAATATTTCATT
TCTAGGTTCTTTCTAGGTAGTCCATGGATTTTAAGTGTGCACTTATGAAA
CTATAACCTTTAATTTTAGTCTATACTGGTGTTGCAAATGAAGACATGGG
TTTTTAAGAACTCTTAACAGCCTGATATTAAATGGTAATAAGACAATCAT
TGGGGGTGGCGGGAGTTTTTTATGTTTCCCCCCCCATCTTCTCTTTTTTT
TTTTGTTCCCCTCTAAACCTCTTCTTCCCTCCTCTTTTCCCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAAAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCAAAGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGACTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTANAAAGAATG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGAT
AAGTGGATATTAGCCCCCAACCTAAGATACCCCACAATTAGATATAATTT
GCTAAACCCTGAAACTCCACAACAATGAAGACTGTAAGGTGAACCCTATG
CCCCTCCC

Query= MSMg01no355_p18.b1 MSMg01no355_p18.b1 CHROMAT_FILE:
MSMg01no355_p18.b1 PHD_FILE: MSMg01no355_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:35 2005
         (558 letters)



>mm_chr2_140889462_140890419
          Length = 958

 Score = 1009 bits (522), Expect = 0.0
 Identities = 546/554 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttactctagcatttcaatatactgaatgccatggtcatatgtctttgccttgat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaattcttactccagcatttcaatatactgaatgccatggtcatatgtctttgccttgat 699

                                                                       
Query: 65  agttaatggtgtcccaattaacagcatccttggcactggatgaacgtgtctttgagatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agttaatggtgtcccaattaacagcatccttggcactggatgaacgtgtctttgagatgt 639

                                                                       
Query: 125 attcaatattgtttctggcaggactaagttctaagtgctctgtaagagtgatctacctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 attcaatattgtttctggcaggactaagttctaagtgctctgtaagagtgatctacctga 579

                                                                       
Query: 185 taacacacctttccctggctccgtctcctcctacagtctcaatttctctttgctaccagc 244
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 578 taacacacctttccctggctccgtctcctcctactgtctcaatttctccttgctaccagc 519

                                                                       
Query: 245 tcttcctagggttgactcataatcattaatattctcagaaaatctacataaggcatgaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcttcctagggttgactcataatcattaatattctcagaaaatctacataaggcatgaca 459

                                                                       
Query: 305 cttccaaagaagctgatgtgtgcaagcctgacaagtgcttcagactctatttttttttct 364
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 458 cttccaaagaagctgatgtgtgcaagcctgacaagtgcttcagactctttttttttttcg 399

                                                                       
Query: 365 tctgctccatgccatgccttttctgtcacctttcctatcctgcctgccttaaatgtacac 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tctgctccataccatgccttttctgtcacctttcctatcctgcctgccttaaatgtacac 339

                                                                       
Query: 425 ttggaatccatcttggaaaatatttcatttctaggttctttctaggtagtccatggattt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttggaatccatcttggaaaatatttcatttctaggttctttctaggtagtccatggattt 279

                                                                       
Query: 485 taagtgtgcacttatgaaactataacctttaattttagtctatactggtgttgcaaatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 278 taagtgtgcacttatgaaactataacctttaattttagtctatactggtgttgtaaatga 219

                         
Query: 545 agacatgggttttt 558
           ||||| ||||||||
Sbjct: 218 agacacgggttttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)