BAC Information

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BAC

Clone NameMSMg01-356A07
Chromosome2 (Build37)
Map Location 21,030,413 - 21,201,881
singlet/doubletdoublet
Overlap geneLOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Upstream geneLOC667609, Etl4, Arhgap21, LOC433408
Downstream geneGpr158, LOC637235, Myo3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356A07.T7 (MSMg01no356_a07.b1)MSMg01-356A07.TJ (MSMg01no356_a07.g1)
ACCAG466264AG466265
length739755
length of high quality
(start - end)		607 (66 - 672)551 (69 - 619)
definitionCHROMAT_FILE: MSMg01no356_a07.b1 PHD_FILE: MSMg01no356_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:37 2005CHROMAT_FILE: MSMg01no356_a07.g1 PHD_FILE: MSMg01no356_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,030,413 - 21,031,019)(21,201,408 - 21,201,881)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGTGCCATTTCTAGAGGTCCTTTCTTCAAATCCATTCATTCCTGCAAAG
AACACCCACTGTCTAATCCTGGTACCTGTGTGGTCAGACAGTGATAATAT
GGCTGGCTGGTTGAGTAGGACACTGGAGTGCTCAGAACCTCAAGCAGAGA
CTGTAACCAAAGCTCTCCCGATTTCTACTCTACTTCGTAGCTATACTTTG
AACAATTTTTTTTTAAATTGTTTTTTCTTTCTGACTAGTCTTCAGTCTCC
TGCAGCAGTGGGTGACTGGATGTGAGGGGAGGCAAGTGTGCATCAGTAGA
AGTGACATCAATTACCAAGATATACAAACAGTCTGTACGATGACATTGCC
CATGCCTGTTGTGCCTGCAATCCTTAGAGTGCCAGCTCTCTCAAGGCCAC
AATTGCTTTAGAGCAATTCTCTAGAGCTTTTTGCCCAGACACTTAACCTC
CAACACCATTAGTCTCATTATCTTTGGTCTTGCTATCTCTCTCCTGTTCA
GTGTCTCATTTGAAGCTTTATGTACATATCCATGTCATTTTAATGGAAAA
TGCAAAACCAATATAAGGGGGCAACCAGTCATTTTCATAAGACATGTGAG
GACTTTAAAGATGACATAAACTCAAATCTGTCAGGGAACTAAGGAAGCTT
GAAGGCCAGCCTCACTGGAAACCCAGAAAAAAACATACN

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTATGTAAAGCCCTTGGAATAGACACTTCCA
TGAGCACCATGCCATTTGTATTAGTTAATGTGAGCCCTGCTATGTAACAG
GAATATCAGTTATCGTTATTATGTATCGTATTGTCCATTACTGTATGCAT
TGCCTTATCATGTCTATAAGCCTATTATTAAATTCATTCTGCAGATGCAG
GAACTAAGAAAGAATGATGGCAAGCATCTCACAGAAGTCACCTTGTAAAT
GGCCAAATTGGAGTCCAGGATTAGGGCCCTGTCTGTGCAATCACTCCATG
GTAAATCTGCATTCTATAAAAGAATGTGTGAAGGAACTGTTAGCTACCCT
TTCACAGGACTGTGAGAAGGGGATTGAGCAGTACAATAGGCGACCCAACA
GGAAGGGCTTGAGCCAGGCCGTAACACATAGACAGCCAAAAGAGCATGTG
ACTGAAGCCTAAGAGAACATGGACACGTGTGAGGTGGCTAGGCATGTCTT
AGTGCCATAGTTTTCAGGTTTAGATCTGAATGTCCTTCACTGTTAAATCA
AGGATGCTAAAAACAATAGCCCCTAAGAATTAAAATTTCCTAGGGAAATT
TTAATGCTAAAAGAGGAAAAGGCTGTAACCTGGCCCTGCCTGAGAAGACA
TCCGAAGTCTGATGGTACTTCTGGGCTCTTTCTCCCTCCGCTCCATGAGA
TATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_a07.b1 MSMg01no356_a07.b1 CHROMAT_FILE:
MSMg01no356_a07.b1 PHD_FILE: MSMg01no356_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:37 2005
         (607 letters)



>mm_chr2_21030213_21031219
          Length = 1007

 Score = 1158 bits (599), Expect = 0.0
 Identities = 605/607 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcctttcttcaaatccattcattcctgcaaagaacacccactgtctaatcctggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcctttcttcaaatccattcattcctgcaaagaacacccactgtctaatcctggtac 260

                                                                       
Query: 61  ctgtgtggtcagacagtgataatatggctggctggttgagtaggacactggagtgctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgtggtcagacagtgataatatggctggctggttgagtaggacactggagtgctcag 320

                                                                       
Query: 121 aacctcaagcagagactgtaaccaaagctctcccgatttctactctacttcgtagctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacctcaagcagagactgtaaccaaagctctcccgatttctactctacttcgtagctata 380

                                                                       
Query: 181 ctttgaacaatttttttttaaattgttttttctttctgactagtcttcagtctcctgcag 240
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ctttgaacaattttttttaaaattgttttttctttctgaatagtcttcagtctcctgcag 440

                                                                       
Query: 241 cagtgggtgactggatgtgaggggaggcaagtgtgcatcagtagaagtgacatcaattac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtgggtgactggatgtgaggggaggcaagtgtgcatcagtagaagtgacatcaattac 500

                                                                       
Query: 301 caagatatacaaacagtctgtacgatgacattgcccatgcctgttgtgcctgcaatcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagatatacaaacagtctgtacgatgacattgcccatgcctgttgtgcctgcaatcctt 560

                                                                       
Query: 361 agagtgccagctctctcaaggccacaattgctttagagcaattctctagagctttttgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagtgccagctctctcaaggccacaattgctttagagcaattctctagagctttttgcc 620

                                                                       
Query: 421 cagacacttaacctccaacaccattagtctcattatctttggtcttgctatctctctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagacacttaacctccaacaccattagtctcattatctttggtcttgctatctctctcct 680

                                                                       
Query: 481 gttcagtgtctcatttgaagctttatgtacatatccatgtcattttaatggaaaatgcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttcagtgtctcatttgaagctttatgtacatatccatgtcattttaatggaaaatgcaa 740

                                                                       
Query: 541 aaccaatataagggggcaaccagtcattttcataagacatgtgaggactttaaagatgac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaccaatataagggggcaaccagtcattttcataagacatgtgaggactttaaagatgac 800

                  
Query: 601 ataaact 607
           |||||||
Sbjct: 801 ataaact 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_a07.g1 MSMg01no356_a07.g1 CHROMAT_FILE:
MSMg01no356_a07.g1 PHD_FILE: MSMg01no356_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:37 2005
         (551 letters)



>mm_chr2_21200931_21201881
          Length = 951

 Score =  886 bits (458), Expect = 0.0
 Identities = 470/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 78  aacaggaatatcagttatcgttattatgtatcgtattgtccattactgtatgcattgcct 137
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 951 aacaggaatatcagttatcgttattatgtattgtattgtccattactgtatgcattgcct 892

                                                                       
Query: 138 tatcatgtctataagcctattattaaattcattctgcagatgcaggaactaagaaagaat 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tatcatgtctataagcctattattaaattcattctgcagatgcaggaactaagaaagaat 832

                                                                       
Query: 198 gatggcaagcatctcacagaagtcaccttgtaaatggccaaattggagtccaggattagg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gatggcaagcatctcacagaagtcaccttgtaaatggccaaattggagtccaggattagg 772

                                                                       
Query: 258 gccctgtctgtgcaatcactccatggtaaatctgcattctataaaagaatgtgtgaagga 317
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 771 gccctgtctgtgcaatcactccatggtaaatctacattctataaaagaatgtgtaaagga 712

                                                                       
Query: 318 actgttagctaccctttcacaggactgtgagaaggggattgagcagtacaataggcgacc 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 actgttagctaccctttcacaggactgtgagaaggggattgagcagtacaataggcgacc 652

                                                                       
Query: 378 caacaggaagggcttgagccaggccgtaacacatagacagccaaaagagcatgtgactga 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 caacaggaagggcttgagccaggccgtaacacatagacagccaaaagagcatgtgactga 592

                                                                       
Query: 438 agcctaagagaacatggacacgtgtgaggtggctaggcatgtcttagtgccatagttttc 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agcctaagagaacatggacacgtgtgaggtggctaggcatgtcttagtgccatagttttc 532

                                                                 
Query: 498 aggtttagatctgaatgtccttcactgttaaatcaaggatgctaaaaacaatag 551
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 531 aggtttagatctgaatgtccttcacagttaaatcaaggatgctaaaaacaatag 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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