BAC Information

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BAC

Clone NameMSMg01-356E02
Chromosome2 (Build37)
Map Location 153,364,973 - 153,365,257
singlet/doubletsinglet
Overlap genenone
Upstream geneDefb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356E02.T7 (MSMg01no356_e02.b1)MSMg01-356E02.TJ (MSMg01no356_e02.g1)
ACCAG466443AG466444
length730756
length of high quality
(start - end)
566 (46 - 611)280 (82 - 361)
definitionCHROMAT_FILE: MSMg01no356_e02.b1 PHD_FILE: MSMg01no356_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:56 2005CHROMAT_FILE: MSMg01no356_e02.g1 PHD_FILE: MSMg01no356_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAGAGTATGCACTACATAACATTCTGTCATAAAATACCTGTTT
CCTACACACAGCATAAGACAAGCTACCACCAGAAACAAATCAGTACAAAC
ACATCAGGGGCTGAACAATCTCAGTAGTGGGTAACACATTTTGCAGAGTT
CGCCAAACAAAGGAATTGAATAGGCTATGGGTAAAGCAAATGAGGGAGAA
TTAAGGAATGAAGTATTTTAAATATTAATATTTCAGTCACGGTACTGTAT
ATTCTTTAAAAAAAACATTTTAACATTTAGTAACACACTAGAGAATTTTA
TCTCCAAGAGATTAGTGCACTGGCAAAGTACTCAGGTGACAATGGGGAGC
AGTGACCAGCAGACAGCGAGCACCCTAGCCTCACAGAGCCCAGGTGACAC
TGGCCTTCACTGATCACTCCTTTGCCAGAGGTCCAGCAAGAACTTGCAGC
ACGATCACCTGCCTGCTGTAATTACAATGCTCAGCAGCAAACTTAAGGAG
CCAGAGGAGTTTCCAGAGGTCACAGGGAGCAGATAGAGAACGTGTAACTG
TAAACTTAACAGACGGTGTGCTGGGACTCCCCCCCCATTCAAATCCCAGA
GACGCGTTTAGGTCCCATTAATTCAATTACGNACGAATTGGACGCATAGC
CCCGAATATATCCTTATGTCTGTTCGCTTT
CGGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGTGTGATTTTTTAAA
AAAGAAAAGAAAAAAGAAAAAAAAAATCTGATTCAGGTGGGTTTTCTTCC
TGAGTCTGTGCAGCCCCGAGGCAGTAGGCGGCCTCCCCCTCCAGCCTGAT
TGAAGAGGCCTACTCTGTGGTTTAGCTGAGTGGTCTCTTCCTGATTCATC
CCACCTCTCTGAGCTGGGTTTTGTAAGGTAGAGCACAGAATAGAGAGGAG
ACCACAGGAGAGCTGAGGCCCCGGTTTCTCTCTCTCTGCTGGAGCTTGCT
GTCTCTGGGCCCCAGGAAGTGTTTGTCCTTGGGCTGTCCATAACGACATT
GCTCCTGGAGAGCCCTCCCCAGAGGTCGTCTTCTGATTTTCCGTCTGCTG
TCTTTTCCCCTTCATCCCCCCCTTTGTTTTGCTTCCGGTATCACCTTTTC
GCCCTCCTTCTTCTCCTCCCTGCTTCCCACGTGTCTCTCTCCTCCCTTTT
GTTTGTGCTCTTTCCCTTTCTCTTATTCCCTTTTCCCGCTTCCTTTGTTG
ATCCTTGTCCTCGCTTTTGCCTCTCCTCTTTTATTCCCATTTTTGCTTAT
CACTCCTTCATTTCTTCTCCTTTGTCGATCTTCTTGTTCTCTCCTTTTCT
TTCCCCCCTTCTTTTTCCATATTTCCCTTACTCTTTCTTCTCTCCCTCTT
CCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_e02.g1 MSMg01no356_e02.g1 CHROMAT_FILE:
MSMg01no356_e02.g1 PHD_FILE: MSMg01no356_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:56 2005
         (280 letters)



>mm_chr2_153364778_153365457
          Length = 680

 Score =  445 bits (230), Expect = e-129
 Identities = 270/290 (93%), Gaps = 15/290 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctagtgtgattttttaa--------aaaagaaaagaaaaaagaaaaaaaaaatctgatt 52
           ||||||||||  ||||||        ||||||||||||||||| ||||||||||||||||
Sbjct: 196 cctagtgtga--ttttaaaaaaaaagaaaagaaaagaaaaaag-aaaaaaaaatctgatt 252

                                                                       
Query: 53  caggtgggttttcttcctgagtctgtgcagccccgaggcagtaggcggcctccccctcca 112
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 253 caggtgggttctcttcctgagtctgtgcagccccgaggcagtaggtggcctccccctcca 312

                                                                       
Query: 113 gcctgattgaagaggcctactctgtggtttagctgagtggtctcttcctgattcatccca 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcctgattgaagaggcctactctgtggtttagctgagtggtctcttcctgattcatccca 372

                                                                       
Query: 173 cctctctgagctgggttttgtaaggtagagcacagaatagagaggagaccacaggagagc 232
           |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||
Sbjct: 373 cctctctgagctgggttttgtagggtagagcacagaatagag--gagaccacaggagagc 430

                                                             
Query: 233 tgaggccccgg--tttctctctctctgctggagcttgctgtctctgggcc 280
           |||||||| ||  | |||||||||||||||||||||||||||||||||||
Sbjct: 431 tgaggccctgggctctctctctctctgctggagcttgctgtctctgggcc 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)