BAC Information

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BAC

Clone NameMSMg01-357C08
Chromosome2 (Build37)
Map Location 76,214,795 - 76,215,179
singlet/doubletsinglet
Overlap geneDrbp1
Upstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct
Downstream geneOsbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357C08.T7 (MSMg01no357_c08.b1)MSMg01-357C08.TJ (MSMg01no357_c08.g1)
ACCAG467118AG467119
length793752
length of high quality
(start - end)
---392 (81 - 472)
definitionCHROMAT_FILE: MSMg01no357_c08.b1 PHD_FILE: MSMg01no357_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:04 2005CHROMAT_FILE: MSMg01no357_c08.g1 PHD_FILE: MSMg01no357_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGACGATCCGC
GGAATTCTGAATTTCCCAAGAATCAGTGCAGGTAAATGTTATTAAAGCTG
TGAGTGTGTGTGTGTGTGTGTGTCTCTGTATGTGTGTATCCCTCTCACCC
TCTATACACACACCCCCCCCCCCATTCCACCCCCCCACCCCCCACAAACC
CAATCACCCACTAAAAACCACCCCCACCCAACCACTCTATATACCAAAAC
ACCCACCTTATCCCACACCCTCCCTACACCCCCCCCTTCCCACAACCACT
TACTCCCCTCCCCATAATAACCACCTCTTTCCCCAACAACCACCCCACAC
TCCCTACACCCCCCCATCCCTTCCCCCCCCCTCCCTCCCCCCCCCAACCC
TCACACCTTACATACCCTCACCTCCACCCCACCCCCCCCTCCAACATATT
ATCCTTACCCCTCCTCACCCCCTTTCCCCCTAACAACATAATCCCTAACA
ACCCACCCATTACCATACCCCCACTCCCCTTCCACACTCCATCAATACCT
CACCCCCCCCCCCCTACAACCACCCATAACCCCTCCAACCAACCACCCCC
CCCACCACCTTATCTACCCCTCCCCCTCCACCCACTATTCCCCACCTACT
CCCCCACTCTCCAATACACCACTTCCACAACCACAATCCACCCCAAATTT
TCCCTTTCCCCCTCTCCCCCTTCATCATCACACACCCCTCTTAATAAATA
TTTCCCCCACACCCTATCTCCCCTCCTTCAAATCCCCCCTCCG
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTTGTGAGAGTTAAA
ATATCTTTTATGGTGAATGATTTTTATATAAAAAAAGATAACATTCTTGA
GGGTTTATTTACTAAGGTATTGTTGGATTTTAAACTATAAAATAGGAAAA
ACGGAGGGGCCAGGAGAAGGTAGTGAGATTAAAGTACATGATATACCTAA
ACAAAAATGTCATTGTGGGGCTGGCGAGATGGCTCAGTGGATAAGAGCAC
TGACTGCTCTCCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTG
GCTCATGACCATCCATATGAGATCTGACGACCTCTTCTGGTACATCTGAA
GACAGCTACAGTGTACTTCTATATAATAAAAAATAAATCTTTGGGCCAGA
GTAGACTCTGGCTTCACATGGTTAANAAAAAAAAGAAAAGAAAAAGAAAG
AAGAACGAAAAAACAATTCACTGAATAATAAACCTGTATGTTAACACAAA
GAACTTAACCAACCCACCCTCGAACCCTCCATAAAAAGAAAACATAAACT
TTCCGCCGCTCTAACCGGCTAAAAAAGTACATGGGTTGGTTGAAAACGGA
ATCTTCAAACGCTTGGAAAATTCACCGCGGGCCCGAAATTTTTTTTCCCG
CTTTTTGAAAACGGGATTCCGCGGTATCCGCCCATTACTTCCGCTTTTGG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_c08.g1 MSMg01no357_c08.g1 CHROMAT_FILE:
MSMg01no357_c08.g1 PHD_FILE: MSMg01no357_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:04 2005
         (392 letters)



>mm_chr2_76214795_76215585
          Length = 791

 Score =  700 bits (362), Expect = 0.0
 Identities = 380/386 (98%), Gaps = 1/386 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttattttgtgagagttaaaatatcttttatggtgaatgatttttatataaaaaaagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttattttgtgagagttaaaatatcttttatggtgaatgatttttatataaaaaaagata 326

                                                                       
Query: 61  acattcttgagggtttatttactaaggtattgttggattttaaactataaaataggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acattcttgagggtttatttactaaggtattgttggattttaaactataaaataggaaaa 266

                                                                       
Query: 121 acggaggggccaggagaaggtagtgagattaaagtacatgatatacctaaacaaaaatgt 180
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 acggaggggccagaagaaggtagtgagattaaagtacatgatatacct-aacaaaaatgt 207

                                                                       
Query: 181 cattgtggggctggcgagatggctcagtggataagagcactgactgctctcccaaaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cattgtggggctggcgagatggctcagtggataagagcactgactgctctcccaaaggtc 147

                                                                       
Query: 241 ctgagttcaaatcccagcaaccacatggtggctcatgaccatccatatgagatctgacga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 146 ctgagttcaaatcccagcaaccacatggtggctcatgaccatccatatgagatctgacaa 87

                                                                       
Query: 301 cctcttctggtacatctgaagacagctacagtgtacttctatataataaaaaataaatct 360
           ||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 86  cctcttctggtgcttctgaagacagctacagtgtacttctgtataataaaaaataaatct 27

                                     
Query: 361 ttgggccagagtagactctggcttca 386
           ||||||||||||||||||||||||||
Sbjct: 26  ttgggccagagtagactctggcttca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 791
Length adjustment: 9
Effective length of query: 383
Effective length of database: 782
Effective search space:   299506
Effective search space used:   299506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)