Query= MSMg01no357_f11.b1 MSMg01no357_f11.b1 CHROMAT_FILE:
MSMg01no357_f11.b1 PHD_FILE: MSMg01no357_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:18 2005
(564 letters)
>mm_chr2_126330578_126331541
Length = 964
Score = 982 bits (508), Expect = 0.0
Identities = 547/560 (97%)
Strand = Plus / Plus
Query: 5 gaattccttcctgccggaggatggaagaaagacatccaagcactcaccccaactacactg 64
||||||||||| | ||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct: 205 gaattccttccagggggaggttggaagaaagacacccaagcactcaccccaaccacactg 264
Query: 65 tggggcagcccaaagaaaggcactccagcgcctgccctgatcccaaaggaaaacagacag 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggggcagcccaaagaaaggcgctccagcgcctgccctgatcccaaaggaaaacagacag 324
Query: 125 ccaagcacctgacccagccacacagacccattgtggcccaaagaaagacaccaaagcacc 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 ccaagcacctgacccagccacacagacccattgtggcccaaagaaagccaccaaagcacc 384
Query: 185 tgccactggagccactacagtggcagatatgaggaggctctggttagttcccagcctggg 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgccactggtgccactacagtggcagatatgaggaggctctggttagttcccagcctggg 444
Query: 245 ctgttgccaaggtcctggtagtgaagtcgaggctgagctggccccaaaggcataagagca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgttgccaaggtcctggtagtgaagtcgaggctgagctggccccaaaggcataagagca 504
Query: 305 ggagagctgaccttgcctcttgcaagctgttggattgggtaagctagctgggacagggct 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggagagctgaccttgcctgttgcaagctgttggattgggtaagctagctgggacagggct 564
Query: 365 ggagagctcaccctgatggtgtgagttcagggttgctggcaggctgaccaattcagctgc 424
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 ggagaactcaccctgatggtgtgagttcatggttgctggcaggctgaccaattcagctgc 624
Query: 425 ctcccaggccagattcaaagctttgagttggcccacctcaatatctacctcatctacaaa 484
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcccaggccagattcaaggctttgagttggcccacctcaatatctacctcatctacaaa 684
Query: 485 ctgtcagagctcatgaaagaattggtcttcctgcagatccaaagctgcaggatctccatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgtcagagctcatgaaagaattggtcttcctgcagatccaaagctgcaggatctccatg 744
Query: 545 acacagtgcaacaacaagat 564
||||||||||||||||||||
Sbjct: 745 acacagtgcaacaacaagat 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_f11.g1 MSMg01no357_f11.g1 CHROMAT_FILE:
MSMg01no357_f11.g1 PHD_FILE: MSMg01no357_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:18 2005
(442 letters)
>mm_chr2_126516243_126517086
Length = 844
Score = 839 bits (434), Expect = 0.0
Identities = 441/444 (99%), Gaps = 2/444 (0%)
Strand = Plus / Minus
Query: 1 actgtgtcgctcaatcaggcttcaaactcctgctgcagtgtaaggatcaaaggacgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 actgtgtcgctcaatcaggcttcaaactcctgctgcagtgtaaggatcaaaggacgagtg 585
Query: 61 accacacatttaaaagaggtagaagggtgtgg--gtgtgtgtgtgtgtgcctgtaatcgt 118
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 584 accacacatttaaaagaggtagaagggtgtgggcgtgtgtgtgtgtgtgcctgtaatcgt 525
Query: 119 gcacagcatctggtgtgagtatctttccaaaggttttatgacaatactctagaaggccaa 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 524 gcacagcatctggtgtgagtatctttccaaaggttttatgacaatactctagaagggcaa 465
Query: 179 tactaattagaaaattagtcagttaatcatacatagcaagatttttttactctagtgaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tactaattagaaaattagtcagttaatcatacatagcaagatttttttactctagtgaaa 405
Query: 239 aatagtgaaatgcaaccttgcgatccttgttttgcctttgtcccagttcaaatgaaggat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatagtgaaatgcaaccttgcgatccttgttttgcctttgtcccagttcaaatgaaggat 345
Query: 299 taattttcttgaggtggcagaaattggaagattttgttcttgagttatactggaaaatgc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 taattttcttgaggtggcagaaattggaagattttgttcttgagttatactggaaaatgc 285
Query: 359 atatttaattatactgggaaatatacacttgagttgatctaggaaatgaatactgaacaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atatttaattatactgggaaatatacacttgagttgatctaggaaatgaatactgaacaa 225
Query: 419 ggatccaggttttctgtttgggct 442
||||||||||||||||||||||||
Sbjct: 224 ggatccaggttttctgtttgggct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 844
Length adjustment: 10
Effective length of query: 432
Effective length of database: 834
Effective search space: 360288
Effective search space used: 360288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
