BAC Information

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BAC

Clone NameMSMg01-357F24
Chromosome2 (Build37)
Map Location 105,118,112 - 105,289,338
singlet/doubletdoublet
Overlap gene0610012H03Rik, Rcn1
Upstream geneD430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1
Downstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357F24.T7 (MSMg01no357_f24.b1)MSMg01-357F24.TJ (MSMg01no357_f24.g1)
ACCAG467293AG467294
length820770
length of high quality
(start - end)		231 (44 - 274)146 (72 - 217)
definitionCHROMAT_FILE: MSMg01no357_f24.b1 PHD_FILE: MSMg01no357_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:21 2005CHROMAT_FILE: MSMg01no357_f24.g1 PHD_FILE: MSMg01no357_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,118,112 - 105,118,298)(105,289,197 - 105,289,338)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATGTGAATTGAGTCACAGCTAAGTTAAACGGCCTTAGAGTTAAAT
AATGCAGTGGCCAGAGGAAAAGTTTCATCAGTCCAAGATGAATCTGGACA
ACTCTGGAGTTTTCTAAATTACTGTTTGGTAAATGTCCTGTCAACAGAAA
TGTTCTCTCTCTCTCTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCNCCCTCCCCCCCTCCCCCNCTTCCCTTCTTCTCTCTC
TCCTTTTCTTCCTCCCTTCTTTTTTCTTTTCTTCCTTTCTTTCTTCCCTT
TTTTCCTTTTTTCTCTTCTCCTTTTTCTTTTCTCCTTCCCTCCCTTCCCT
CCCTTTTTCCTTTCCCCTCCCCTTTCCCCTTTTCTTTTTTTTTCCTCTCT
CTTTTCTTCTCTCCCTCCTTTCTCTTTTCCCTTCCTTCTTCTCCTTTCTT
CTTTTCCTTTCTTCCCCTCCCTCTTCTTTCCCTCTTTTCTCTTCTCTTCC
TCCTTTTTCCCTTCCCCTTTTTTTTCCTCTTTTTTCTTTTCTTTCTCTCC
TCCTTACCTCTTTCTTTTTTTTTTTCNTCTCCTTTTCTTTCCTTCTCTTT
CTCCTCTTCTTTTTCTTCCTCTCCCCCCTTCTTTANCTTTCCCTTTCCTT
TCTTATTTTCCCTTCTTTTCTCCCTTTTCCTCATCCATCCTATTTTCAAT
CTCTTATTTATCCTCCAAACTCCACACCTATCTCTTCCTAATTCTTACCA
TTACCCTATTCTCCTTCTCN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGCCTGGAGAGTCACAGCCATTCACCA
GTGTTCTGGCCAGAGAAGGTTTGGTGCCCTCATCCCCCTGTGCTGCCCTG
GAGGAGCCTGGTTTGAATGGTGAGTTTTTGCTTTGGTGTGTGTGTGTGTG
TGTGTATGAGTGTGTNCNCCCNNCCNCNNCNCCCCCCCCCCCCCCNNCCC
CCCCCCCCNCCCCCCCCCCCCCCCCCNCNCCCCCCCCNCCCCCCCCCCCC
CCCCCCCCCCCCCTTTTTTTCCCCCCTTCTCCCCCTCCTCCTCCTTTTTT
TTTCTTTTCTTTCTTTTTCTTTTCCTCTCCCCTCCTCTTTCCTTCTCCTC
CCCTCCCCCTTTTTCTCTTTCTTTTTCTTTCCTCTTCTTTTTTTTTTTTT
TTCCTTTTTCTTTCTTCTTTCCTCTCCCCTTTTTTCTTCTTTTTCTTTTC
CTTCTTTCTTTTTTTCCCCTTTCTTTCTTTTTCTCTTTTCTTTTTTTCTT
TCTCCTTTTTCTCCTCTCTTCTTTTTTCTTCTCCTTTTTCTTTTTCTTTT
TCTTTCTCTTTTTTTTTATTTTNCTTTCTTTTTCTTTCTCTTTTTTTTCC
CTTCTTTCTTTTTTTTTTCTTTTCCCTTCTTTTCTTTTCATCCTTTCTTT
TTCTCTTTTCCTCCCTTTTCTTTTTTCTTCCCTCCTCTCTTTTCTCTTTT
TTTTTTACTTTCTTCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_f24.b1 MSMg01no357_f24.b1 CHROMAT_FILE:
MSMg01no357_f24.b1 PHD_FILE: MSMg01no357_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:21 2005
         (231 letters)



>mm_chr2_105117908_105118539
          Length = 632

 Score =  331 bits (171), Expect = 3e-95
 Identities = 183/187 (97%), Gaps = 1/187 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatgtgaattgagtcacagctaagttaaacggccttagagttaaataatgcag 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctcatgtgaattgagtcacagctaagttaaatggccttagagttaaataatgcag 264

                                                                       
Query: 65  tggccagaggaaaa-gtttcatcagtccaagatgaatctggacaactctggagttttcta 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggccagaggaaaaagtttcatcagtccaagatgaatctggacaactctggagttttcta 324

                                                                       
Query: 124 aattactgtttggtaaatgtcctgtcaacagaaatgttctctctctctctccctccatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 325 aattactgtttggtaaatgtcctgtcaacagaaatgttctctctctccctccctccctcc 384

                  
Query: 184 ctccctc 190
           |||||||
Sbjct: 385 ctccctc 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 632
Length adjustment: 9
Effective length of query: 222
Effective length of database: 623
Effective search space:   138306
Effective search space used:   138306
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no357_f24.g1 MSMg01no357_f24.g1 CHROMAT_FILE:
MSMg01no357_f24.g1 PHD_FILE: MSMg01no357_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:21 2005
         (146 letters)



>mm_chr2_105289025_105289570
          Length = 546

 Score =  252 bits (130), Expect = 1e-71
 Identities = 139/142 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggcctggagagtcacagccattcaccagtgttctggccagagaaggtttggtgccctcat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggcctggagagtcacagccattcaccagtgttctggccagagaaggtttggtgccctcat 255

                                                                       
Query: 63  ccccctgtgctgccctggaggagcctggtttgaatggtgagtttttgctttggtgtgtgt 122
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ccccctgtgctgcactggaggagcctggtttgaatggtgagtttttgctttggtgtgtgt 195

                                 
Query: 123 gtgtgtgtgtgtatgagtgtgt 144
           |||||||||||| || ||||||
Sbjct: 194 gtgtgtgtgtgtgtgtgtgtgt 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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