Query= MSMg01no357_m19.b1 MSMg01no357_m19.b1 CHROMAT_FILE:
MSMg01no357_m19.b1 PHD_FILE: MSMg01no357_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:53 2005
(183 letters)
>mm_chr2_120394515_120395097
Length = 583
Score = 310 bits (160), Expect = 5e-89
Identities = 177/186 (95%), Gaps = 6/186 (3%)
Strand = Plus / Minus
Query: 4 ggaattccttgggtatccactttgccagtaacagaaatactaacttttcttactttgtca 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggaattccttgggcatcaactttgccagtaacagaaatactaacttttcttactttgtca 247
Query: 64 tgaaacagctttcacaaatttgaacttcaaaggacttaagctt------tgtgtgtgtgt 117
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 tgaaacagctttcacaaatttgaacttcaaaggacttaagctttgtgtgtgtgtgtgtgt 187
Query: 118 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcctttaatttcaacacttg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 186 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcctttaatttcagcacttg 127
Query: 178 agagac 183
||||||
Sbjct: 126 agagac 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space: 100625
Effective search space used: 100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no357_m19.g1 MSMg01no357_m19.g1 CHROMAT_FILE:
MSMg01no357_m19.g1 PHD_FILE: MSMg01no357_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:54 2005
(491 letters)
>mm_chr2_120222725_120223615
Length = 891
Score = 949 bits (491), Expect = 0.0
Identities = 491/491 (100%)
Strand = Plus / Plus
Query: 1 tgagactaaaagtctgagaactgctgacacaagcctgcagactgagactcctaggctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagactaaaagtctgagaactgctgacacaagcctgcagactgagactcctaggctatg 260
Query: 61 gtttcagctctgatgggccataagtacgcactactctttctgtgtaaagttaggaggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcagctctgatgggccataagtacgcactactctttctgtgtaaagttaggaggctg 320
Query: 121 ggaccagataaccattaagtcacaggaaaagtctgtagtttcatgttttttaccttgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaccagataaccattaagtcacaggaaaagtctgtagtttcatgttttttaccttgaaa 380
Query: 181 ttgtagatttcattgtagcaatcagcacttttcagaaaccaggttatatttaaagactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtagatttcattgtagcaatcagcacttttcagaaaccaggttatatttaaagactgg 440
Query: 241 tcacaaggctctccatcaactatgaaagaagaaatcactgtaaacatgagaggattccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacaaggctctccatcaactatgaaagaagaaatcactgtaaacatgagaggattccaa 500
Query: 301 atgaagcattctttcagcatctctctattaacttacattctttttattttccaccctagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaagcattctttcagcatctctctattaacttacattctttttattttccaccctagc 560
Query: 361 ttagatactcaatatctttaaacataaggaattcgggtcacacaaagaactctttgttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagatactcaatatctttaaacataaggaattcgggtcacacaaagaactctttgttct 620
Query: 421 tttttcttaggcttgttttgaggcaggatttgaggccaggccttaaattcatcgccatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttcttaggcttgttttgaggcaggatttgaggccaggccttaaattcatcgccatcc 680
Query: 481 ctccgtttcag 491
|||||||||||
Sbjct: 681 ctccgtttcag 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
