BAC Information

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BAC

Clone NameMSMg01-357O11
Chromosome2 (Build37)
Map Location 83,780,597 - 83,780,752
singlet/doubletsinglet
Overlap geneZswim2
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik
Downstream geneLOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357O11.T7 (MSMg01no357_o11.b1)MSMg01-357O11.TJ (MSMg01no357_o11.g1)
ACCAG467689AG467690
length767769
length of high quality
(start - end)
156 (67 - 222)339 (74 - 412)
definitionCHROMAT_FILE: MSMg01no357_o11.b1 PHD_FILE: MSMg01no357_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:01 2005CHROMAT_FILE: MSMg01no357_o11.g1 PHD_FILE: MSMg01no357_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCCGCAAAACTACTCATTATTCGAAAAGGATCCGCGGAATTC
AAATTGCGCCCCATTCTTGTAAAATGATGGTGTGTATTCCTGGATGCCTT
GTTGGTGTTCCCCAGCCCTGTAAATTAAATGAGAATCCTACTATCTTCTA
AATATTTGCTCATTAAAATCGGTTTCTCTATGATAGTTTCTATGATCATT
TTCTTTTTGCTCAGTTTTAAAACTGTAACAGCTCATTAAAGGGTATCTTA
AATGTTCATACTTTGAAAGCATGTGCATGAGGAATAGTTCCATTTCGTCT
TGTTAAAAGAGAACATATGTTTCATATTTACATGTCCTGCTCTTATCTGT
CAAAAATGAGCCACTGAACACTTCCCTATCGTTTTAGAAACTTTAAATCT
ATTGCCTCATAGTTAGGATTACTGGATACTGCTTATTACTCAGCGCTTTG
TTCATAGCATGCTTCTCTGATTTGCCTATTCTATTGACTGTAATACTTCT
ACACAATACTGCCTTACATATTACTATTCTTTTACCCCTAGAAAAGTCCC
CATGCTTACCTTCATTCCTCTACAAAATCTTATCTTATACTCATCTCTTC
CGCATCAGCCCCTTCTTACTCCTTCGTAATATATCTTTTCCTTTATTTTA
TCAATCCCTGCTCTCTGTTTGCCACATTCTCTCCCACCCTTACATAACAT
TTCCCTCCTCCATTTCGTTTGCCTTCTCTCCCTTAATACGGCCATTTTAC
CTTATGCGATCGATTTC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTCAGGAAGCAGGAGCTGATGCAGA
GGCCATGGAGGGATGTTCTTTACTGAATTGCTTCCCCTGGCTTGCTCAGC
CTGCTCTTATAGAACCCAGACTACCAGCCCAGACATGGTCCCACCCACAA
GGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTGGAT
CTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCA
GCTGTGTCAAGTTGACACAAAACTAGCCAGTACACTTATTAAAAGTAGGT
TCTGAAAAAAAAAACTAAGCCTATACTTGGGTTTTATATGTTGGACCCTG
AGAGGGCACAGCCAAGGAAGGAAAGGAACCAGCACCCACATGGGGTCAGC
AAGGCAGAGCTAGGGACACAGATTGTCTTCAGGGAAACAAGTTGGAACGG
TGTGAACCGGTTAACACTGTGTTTCTGGCTCTAGTATTCTTGTGTGCGTT
CCTTCCTTATTTTCTATTTTAATGTCCTCAGTAAAGTATCACCAAATTTG
ATGTTCCCCTTTTGTGCTGAACCTTGTATCATTTCCCTTGTAAGTTACCC
CCCTTTCTTACCTTAAGTGCTCTTTTCCTACCCACCTTTGCCCTTGTTCC
TGCCAATATACCCTCCTCTTATACCCTTACAGTCCTCCCCCACCTATCGT
CTTCTCTTCCCCTTCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_o11.b1 MSMg01no357_o11.b1 CHROMAT_FILE:
MSMg01no357_o11.b1 PHD_FILE: MSMg01no357_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:01 2005
         (156 letters)



>mm_chr2_83780397_83780952
          Length = 556

 Score =  294 bits (152), Expect = 2e-84
 Identities = 155/156 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtaaaatgatggtgtgtattcctggatgccttgttggtgttccccagccctgtaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgtaaaatgatggtgtgtattcctggatgccttgttggtgttccccagccctgtaaatt 297

                                                                       
Query: 61  aaatgagaatcctactatcttctaaatatttgctcattaaaatcggtttctctatgatag 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 296 aaatgagaatcctactatcttctaaatatttgctcattaaaatcagtttctctatgatag 237

                                               
Query: 121 tttctatgatcattttctttttgctcagttttaaaa 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttctatgatcattttctttttgctcagttttaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)