Query= MSMg01no358_f07.b1 MSMg01no358_f07.b1 CHROMAT_FILE:
MSMg01no358_f07.b1 PHD_FILE: MSMg01no358_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:34 2005
(401 letters)
>mm_chr2_19165407_19166208
Length = 802
Score = 524 bits (271), Expect = e-153
Identities = 327/347 (94%), Gaps = 9/347 (2%)
Strand = Plus / Plus
Query: 7 gaattctgtgattgctcagctctccccagaaggtaactttgcgtcctacatttatttcca 66
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagtgattgctcagctctccccagaaggtaactttgcgtcctacatttatttcca 266
Query: 67 aaatgaaactgattttttttt-acattttattaaactacacatcaaaaagaacttatgag 125
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaatgaaactgattttttttttacattttattaaactacacatcaaaaagaacttatgag 326
Query: 126 ccatcagctgtgaattgtcattataatcttacaaaccaccaaaccacagctccattttca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccatcagctgtgaattgtcattataatcttacaaaccaccaaaccacagctccattttca 386
Query: 186 atttccagaaagtgtgatgtgggcaagatttgtagagctttgttgtccagagcctctgtc 245
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 atttccagaaagtgtgatgtgggcaagatttgtagagctttgctgtccagagcctctgtc 446
Query: 246 tctctgtccctggctctgtctctgtctctgtctc--tgtctctctctctcttctctgtct 303
|||||||||||| |||||||| ||||| ||||| ||||||||||||||| |||| ||
Sbjct: 447 tctctgtccctgtctctgtct--gtctccgtctccctgtctctctctctct-ctctctcc 503
Query: 304 ctctctctcttctctctctctctctctctctctctctctctctctct 350
| |||||||| | ||||| ||||| | | ||||||||| ||||||||
Sbjct: 504 ccctctctctcc-ctctccctctcccac-ctctctctc-ctctctct 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space: 310856
Effective search space used: 310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_f07.g1 MSMg01no358_f07.g1 CHROMAT_FILE:
MSMg01no358_f07.g1 PHD_FILE: MSMg01no358_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:34 2005
(456 letters)
>mm_chr2_19381887_19382742
Length = 856
Score = 874 bits (452), Expect = 0.0
Identities = 455/456 (99%)
Strand = Plus / Minus
Query: 1 atacttgtgaaatcacatagaccaaaaatccaaatgaaaagcttttcgaaagaatgcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atacttgtgaaatcacatagaccaaaaatccaaatgaaaagcttttcgaaagaatgcata 597
Query: 61 gaaagtttctatattaagggaatgtcttgtcccctgttatgaggacaattcacagcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaaagtttctatattaagggaatgtcttgtcccctgttatgaggacaattcacagcttct 537
Query: 121 cctgaggagggggtagggaacagagtggggcttcattttctcacaaaaggtacaatgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cctgaggagggggtagggaacagagtggggcttcattttctcacaaaaggtacaatgtga 477
Query: 181 agtgcatctgtgaacactgcataatttgttatgttctacaaagaggtgggtttttgttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agtgcatctgtgaacactgcataatttgttatgttctacaaagaggtgggtttttgttat 417
Query: 241 acacacactagagctgttcagcactgcctcacccatgatctctattcagatccagcaaag 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 416 acacacactagagctgttcagcactgcctcacccacgatctctattcagatccagcaaag 357
Query: 301 aaaccggcctccaaaaactgaaagaaaagtaaatttttctttaaaaattagatacagatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaaccggcctccaaaaactgaaagaaaagtaaatttttctttaaaaattagatacagatt 297
Query: 361 atcacttcaaaacgcaggaggggattttacaagtgatggtgtgcccgttagctttgcaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atcacttcaaaacgcaggaggggattttacaagtgatggtgtgcccgttagctttgcaat 237
Query: 421 ggacatccagccctttataaaacacatactagtggt 456
||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggacatccagccctttataaaacacatactagtggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
