BAC Information

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BAC

Clone NameMSMg01-358F11
Chromosome2 (Build37)
Map Location 122,087,003 - 122,087,513
singlet/doubletsinglet
Overlap geneSord
Upstream geneTrp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832
Downstream geneDuox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358F11.T7 (MSMg01no358_f11.b1)MSMg01-358F11.TJ (MSMg01no358_f11.g1)
ACCAG468019AG468020
length742620
length of high quality
(start - end)		514 (37 - 550)44 (82 - 125)
definitionCHROMAT_FILE: MSMg01no358_f11.b1 PHD_FILE: MSMg01no358_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:35 2005CHROMAT_FILE: MSMg01no358_f11.g1 PHD_FILE: MSMg01no358_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGG
AGGCTGACACCTAGCTGTGACACGCCACCTCTAGCTGTATAACTCAAATA
ACATTGTTGTGTCTCTTTTCTACCAAGATGCTTAGTGTCACAGAGGTAAC
AGGAAGGATAACATGAACAGGTGTTCTGTCTTCCAAGTTTCTTCTAGAGT
CAATAAACCCTCTGCTCCACCTTCATAGACAATGGTCTCCACATGGGACC
TCAGGATGATGAGTCTACTCTCAGGTGTACTCTCTCCGTACCTCCTGGGT
ACCAGGCTTTGTTTTAGACACATTGCCAGTTATGGCAGCAAGGAAGTTGT
ATGTACCATCTGCAGGTGACTAGCAGGCCAGTGATGCCACACCACAGAGG
GGTAGTGAGACTTAATGCATGTGGCTGTCCTTCCTCTTCCACCCTGATAC
CTGAGGACAGATGTCACCTTCCATAGTTGATACTGCAGGCCAGTTGCCAG
GCAACCCGAGGATGGCATAGAGGTGAACGTGATCTGAGGTACTCCCCAGG
CATGACTCATGTCCTCCTGATATNGGTATGGAGCCTTCACGCAGAAAGTA
CGGGCCACCCCTCCCATGAGTGCAGCAGGGCGGAACACCCAATAAGGGAC
TATTACCGGCTTTCCTGCCTTGGAATTGACTGTTGTGGAAGAAAAATGCC
CTTGGTTGGGGATCAAACCCCCCCACAGGGGGCTTGGGAATT

NNCTCTTTTTCCAATATATNNNTAACCTGNNCNCCGCCTGNCCTTCCACA
TTTANGTCACACTATANAANGATCCGNCGNAATTCCTTCCTGNNTGGTTG
ATACAAAACCTAACCACAACCACTAATTTGTACTGNNNTGNNNNNTTTTT
AATCCTTAATCCTAAATTCCNNNTTTCCAAATTTTTTTCACACCTCCACC
CCTAAAAAAAAAATTTAAAAAAATTTTTCCCCCCAAAACCCCTCAAAACA
CCTTTTTTTTTTTAANNAAAAACCCAAAAAAATTCCCCCTTTTTTTCNNN
NNNNNNNTCTTTTTTTTTTTTCTAAAAANAAAAANANCCCCCCCTTTTTT
TCCTCCCCCTCAAAAAAAAAAACCCCCCCCCCCCCAAAAAAAATTCTTTT
TTTTTCCTTTTTTTTAANNNNNNNTNNNNCCTCCTTTTTTTTNNNNNNNN
CTATTNNNNNNNNNNNNNAATCCCCTACATCCCCCNNNNNNNNNNNNNTC
TATTATTTTATTTTTTGCGTGTTTTTCTTTCTTCTGTTTTCCCCNNTNNN
CCNTCNNTNTTTTCCATTTTTTCTATTCTCTTTCACTTTTCACNTATCTA
TCCCTAACTTTCTCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_f11.b1 MSMg01no358_f11.b1 CHROMAT_FILE:
MSMg01no358_f11.b1 PHD_FILE: MSMg01no358_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:35 2005
         (514 letters)



>mm_chr2_122086800_122087713
          Length = 914

 Score =  988 bits (511), Expect = 0.0
 Identities = 511/511 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagggaggctgacacctagctgtgacacgccacctctagctgtataactcaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagggaggctgacacctagctgtgacacgccacctctagctgtataactcaaat 263

                                                                       
Query: 64  aacattgttgtgtctcttttctaccaagatgcttagtgtcacagaggtaacaggaaggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacattgttgtgtctcttttctaccaagatgcttagtgtcacagaggtaacaggaaggat 323

                                                                       
Query: 124 aacatgaacaggtgttctgtcttccaagtttcttctagagtcaataaaccctctgctcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacatgaacaggtgttctgtcttccaagtttcttctagagtcaataaaccctctgctcca 383

                                                                       
Query: 184 ccttcatagacaatggtctccacatgggacctcaggatgatgagtctactctcaggtgta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccttcatagacaatggtctccacatgggacctcaggatgatgagtctactctcaggtgta 443

                                                                       
Query: 244 ctctctccgtacctcctgggtaccaggctttgttttagacacattgccagttatggcagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctctctccgtacctcctgggtaccaggctttgttttagacacattgccagttatggcagc 503

                                                                       
Query: 304 aaggaagttgtatgtaccatctgcaggtgactagcaggccagtgatgccacaccacagag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaggaagttgtatgtaccatctgcaggtgactagcaggccagtgatgccacaccacagag 563

                                                                       
Query: 364 gggtagtgagacttaatgcatgtggctgtccttcctcttccaccctgatacctgaggaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggtagtgagacttaatgcatgtggctgtccttcctcttccaccctgatacctgaggaca 623

                                                                       
Query: 424 gatgtcaccttccatagttgatactgcaggccagttgccaggcaacccgaggatggcata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatgtcaccttccatagttgatactgcaggccagttgccaggcaacccgaggatggcata 683

                                          
Query: 484 gaggtgaacgtgatctgaggtactccccagg 514
           |||||||||||||||||||||||||||||||
Sbjct: 684 gaggtgaacgtgatctgaggtactccccagg 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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