Query= MSMg01no358_f19.b1 MSMg01no358_f19.b1 CHROMAT_FILE:
MSMg01no358_f19.b1 PHD_FILE: MSMg01no358_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:36 2005
(496 letters)
>mm_chr2_84362809_84363704
Length = 896
Score = 799 bits (413), Expect = 0.0
Identities = 449/465 (96%), Gaps = 7/465 (1%)
Strand = Plus / Minus
Query: 39 ttgaggcagaaaattctgggccttcagaacaaaggctactgagtccttttagcttgtgct 98
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 896 ttgaggcagagaattctgggccttcagaacaaaggctagtgagtccttttagcttgtgct 837
Query: 99 tcttatggcaggcagatttctgagttcaaggccagcctggtctacaaagtgagttccagg 158
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 836 tcttatggcaggcagatttctgagttcgaggtcagcctggtctacaaagtgagttccagg 777
Query: 159 acagccaggactacacagagaaaccctgtctcaaaaacaccaaaaaaaaaataaataaat 218
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 776 acagccaggactacacagagaaaccctgtctcaaaaacaccaaaaaaaaaaaaaaaaaaa 717
Query: 219 aaaa-------taaaaaaatgcacttctctttaggtttcttgacctaaagaggggtttgc 271
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aaaaaaaaaagaaaaaaaatgcacttctctttaggtttcttgacctaaagaggggtttgc 657
Query: 272 ttcctgttttttggttggctggtcttctgtgtctctgtggcctgtggagaatttattatc 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttcctgttttttggttggctggtcttctgtgtctctgtggcctgtggagaatttattatc 597
Query: 332 aaaaggaaaagtctttgttaaggaaattgtcttgttatattgaaaaaaaaatagcctaag 391
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaaaggaaaagtctttgctaaggaaattgtcttgttatattgaaaaaaaaatagcctaag 537
Query: 392 tgctaaattcttgcatctgggtagaatgtcgagggagtgatggttagaggtttcctggaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgctaaattcttgcatctgggtagaatgtcgagggagtgatggttagaggtttcctggaa 477
Query: 452 tctgggatgtttttattgttgagaataattaccccaaatctgtaa 496
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tctgggatgtttttattgttgagaataattaccccaaatctgtaa 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_f19.g1 MSMg01no358_f19.g1 CHROMAT_FILE:
MSMg01no358_f19.g1 PHD_FILE: MSMg01no358_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:36 2005
(449 letters)
>mm_chr2_84205586_84206434
Length = 849
Score = 830 bits (429), Expect = 0.0
Identities = 444/449 (98%)
Strand = Plus / Plus
Query: 1 caggagaccattgttttctttcttactactggttttggaatgcaatgtaattgctattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggagaccattgttttctttcttactactggttttggaatgcaatgtaattgctattaa 260
Query: 61 ctttatcgccttcagaaaattaatgcccttggatgttttggcttattacattaaaaaata 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttatcgccttcagaaacttaatgcccttggatgttttggcttattacattaaaaaata 320
Query: 121 gagacagtttaatctgaagtgtctcagctggaatggtttttaatttaaagagattattat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagacagtttaatctgaagtgtctcagctggaatggtttttaatttaaagagattattat 380
Query: 181 ctctcaaatgcttttaaatttttacaccatgtccactgtaattaattacagcttcagtaa 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ctctcaaatgcttttaaatttttacaccatggccactgtaattaattacagcttcagtaa 440
Query: 241 agaattcaggaagagtccactgagaaaatgatccagtaaaattcccagatatgaagcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaattcaggaagagtccactgagaaaatgatccagtaaaattcccagatatgaagcatt 500
Query: 301 taaccaggctagagaggcaaagaaaatgataggcaagattcattaacactttcatgttca 360
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaccaggctagggaggcagagaaaatgataggcaagattcattaacactttcatgttca 560
Query: 361 tgtaaggtgcagaaaaaaaaaagaagcactctaatgtttggaagcagagaataacaaata 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tgtaaggtgcagaaaaaaaaaagaagtactctaatgtttggaagcagagaataacaaata 620
Query: 421 agctctgcatttgatgcagtttttttttt 449
|||||||||||||||||||||||||||||
Sbjct: 621 agctctgcatttgatgcagtttttttttt 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
