BAC Information

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BAC

Clone NameMSMg01-358G18
Chromosome2 (Build37)
Map Location 14,766,325 - 14,766,756
singlet/doubletsinglet
Overlap geneCacnb2
Upstream genePtpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, LOC100041164, LOC625335, LOC625342
Downstream geneLOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358G18.T7 (MSMg01no358_g18.b1)MSMg01-358G18.TJ (MSMg01no358_g18.g1)
ACCAG468081AG468082
length760857
length of high quality
(start - end)		435 (36 - 470)---
definitionCHROMAT_FILE: MSMg01no358_g18.b1 PHD_FILE: MSMg01no358_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:40 2005CHROMAT_FILE: MSMg01no358_g18.g1 PHD_FILE: MSMg01no358_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATGC
CAGCCAGGTCTGGACAGTGAGTCTCAAGACAGCCTAGACTGCATAGAAAG
ACCTTTTTTCAAAAAACATAAATAAACAAACAAAACCTGAAACCTAAACA
GCATGCATTTTGGCTTTCTGGTTATACACCATGGAAAACAAATCCTGGGC
TAACAACATAGGTCAGAGGGTAAAGATGCTTGCCAATAAGCCTGATGACC
TGAGATTGGTCCTCAGAGTCCACATGGTACGAGGAGAGAACTGATGCCTC
AATTTCTATTATTTCCCAGTCTTGCCCTTAACTCTCCCTGGATGTATCTA
CCCCTCTCTCCCTACCCCTACTCAACTATGTCCTTGTTATTTTGTATAAA
ACCCATCAACTCCAATTTATCTGCTCATACACTTCTAGGTACAGGGTCAT
TCTTTGGATTACCATCAACCTGCCAGGATCCACACCCTTAACAAAAACTT
ACTCTCCCTTCCTGAGAAGCCGGCNACTGTCCATAGCTCCTTAANTGGGA
ATGGGAGCTCATGAAACCCTCCCACTCATGCTAAAATGTTGACTGCTTGA
TTTGTGCAAGCCCCAAGCAAAAAAAAAAACTGCGTGAAATTCTTGAACAA
CAAGGGCCCGGGCTGGCCCAAAAAACAAATTTTGTCCAAGCCCCCCTGCA
CCCCAAAGGTAAAAAATTTGGCCTCCCCTCCCCCCGAACCTTTGGAGGGG
GAGTGGAGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCGTTCTCGAGATCCCGGCCTCCAAAAGCGTGTTTT
TATGAAGTATTAAACATAAGCTATACATATATATATATATATATCGCTGT
GTGTATGCGCCCCCCGCCCCCCCCNNCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTCCTCCCCC
CCCCCCCGCTTGTCCGCCGGCCGCCCCCCCCCCCCCCCTCCCCCCCCCCC
CCGCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCTCCGCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCGCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCTCTCGCTCCCCCCCCCCCTCCCCCGTCGCCC
TCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCTCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCTCCCCGCCC
TCCCCCCCCCCCCCTCCCCCCCTCCCCCCCCCCCCCTTCCCCCCCCCTTC
CCCCCCCCCCCTCTCCCCCCCCCCCCCCCTCTCCCGGTCCCCCGTCCCTC
CCCCCCCCCTCCCCCCCCCCCACCCTCCCCCCCTCCTCCCCCCCCCCCCC
CCTCCCCGCCTCCTCCCCCCCCCCCCCTCCCCCCCCCCCCCTCCCCCGCC
CCCCTCTCACCCCCCCCTCCCCCCCCCCCCTCCCCCTCCCTCCCCCTCTC
CCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_g18.b1 MSMg01no358_g18.b1 CHROMAT_FILE:
MSMg01no358_g18.b1 PHD_FILE: MSMg01no358_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:40 2005
         (435 letters)



>mm_chr2_14766121_14766956
          Length = 836

 Score =  743 bits (384), Expect = 0.0
 Identities = 420/432 (97%), Gaps = 1/432 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgccagccaggtctggacagtgagtctcaagacagcctagactgcatagaaa 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgccagccaggtctgcacagtgagtctcaagacagcctagactgcatagaaa 264

                                                                       
Query: 65  gaccttttttcaaaaaacataaataaacaaacaaaacctgaaacctaaacagcatgcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaccttttttcaaaaaacataaataaacaaacaaaacctgaaacctaaacagcatgcatt 324

                                                                       
Query: 125 ttggctttctggttatacaccatggaaaacaaatcctgggctaacaacataggtcagagg 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggctttctagttatacaccatggaaaacaaatcctgggctaacaacataggtcagagg 384

                                                                       
Query: 185 gtaaagatgcttgccaataagcctgatgacctgagattggtcctcagagtccacatggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaaagatgcttgccaataagcctgatgacctgagattggtcctcagagtccacatggta 444

                                                                       
Query: 245 cgaggagagaactgatgcctcaatttctatt-atttcccagtcttgcccttaactctccc 303
            ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 445 tgaggagagaactgatgcctcaatttttatttatttcccagtcttgcccttaactctccc 504

                                                                       
Query: 304 tggatgtatctacccctctctccctacccctactcaactatgtccttgttattttgtata 363
           |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 505 tggatgcatctaccactctctccctatccctactcaactatgtccttgttattttatata 564

                                                                       
Query: 364 aaacccatcaactccaatttatctgctcatacacttctaggtacagggtcattctttgga 423
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 aaacccatcaactccaatttttctgctcatacacttctaggtacagggtcatcctttgga 624

                       
Query: 424 ttaccatcaacc 435
           ||| ||||||||
Sbjct: 625 ttatcatcaacc 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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