BAC Information

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BAC

Clone NameMSMg01-358M21
Chromosome2 (Build37)
Map Location 130,607,879 - 130,746,103
singlet/doubletdoublet
Overlap gene4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn
Upstream geneStk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11
Downstream geneLOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358M21.T7 (MSMg01no358_m21.b1)MSMg01-358M21.TJ (MSMg01no358_m21.g1)
ACCAG468372AG468373
length758824
length of high quality
(start - end)		433 (37 - 469)245 (66 - 310)
definitionCHROMAT_FILE: MSMg01no358_m21.b1 PHD_FILE: MSMg01no358_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:10 2005CHROMAT_FILE: MSMg01no358_m21.g1 PHD_FILE: MSMg01no358_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,607,879 - 130,608,307)(130,745,868 - 130,746,103)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTG
CCTTATCCGACTGTACACTTGAACTGATCAGGCTTATTTATCACTATCAT
TACTGGATGTATCCATATGACACGTGTGCTATGGGGTGAGGAGTACGCAT
GTGCCACAGCACATGGATAGAGGACAACTTCTTTCCTATCACCTTGCTGA
AGCAGGGCCTTTCTGGCTGTTTCTGCTGCTCTGTGGACTCTATGCTAATT
GGCCCATGATTTACAGGCAATTCCCCTATCTCTATCCTGACACAGGCCTT
CTATCCTGACACAGGAACACTGGAATTAGAGATGCAAGCCATGCTATCCA
GGTTTTTGTGGGTTCTAGGAATAGAATTCAGGTCACCCCACTTGCTCAGA
AAGTGTTTTTGCCAGTTAAGCCATTGCTGGCCCTTTTATTTTAAAAACAT
ACTTATTTATTCATTTCTGTGTGGGAGGGTATGCAGCCTGCAACCATGTT
GTGTGGCAATTTCCTCCCAGATGAAATAATCCCATCTTGAAGGGAATGCT
CATTAAAACTTAAAAATTAAAGGGGGTGGGGGGGGCACGCCTTTTATCCC
CGCCCTTCCGGAGGAGAAGGAAGGGGGATATCTGAATTCATGGCCGGCCC
TGGTTACAAATGAGGTTCCAGCACCGCCCNTNNCTTNTTTTTTCAACCCT
TCTCTTCTTCTATCCCCATTCACNATACATACCTCCTATTCTTTTGTTCC
CCTTATTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAACAGCCAGAGTTACAAAGTGAGACCTTGACT
CAAAAAACTACATTTGCATAGTTTACGTAGATGTATACAAAGTAACAACA
GTAATTGGTTAACCCAAGAAAATCTTCAACAAAAAGCCTGATAGACTCAG
GAAAGCAATTTTCAGATGTGTGTGTATGTGTGTGTGTATGTATATATATA
CTTATATACACACATACATACATGTCTATGTATATATGTGTATGTATGTG
TGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTNNNNNNTNNNNNNNNNNNNNNNNNNTNNTNN
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTNNTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_m21.b1 MSMg01no358_m21.b1 CHROMAT_FILE:
MSMg01no358_m21.b1 PHD_FILE: MSMg01no358_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:10 2005
         (433 letters)



>mm_chr2_130607675_130608507
          Length = 833

 Score =  806 bits (417), Expect = 0.0
 Identities = 426/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgccttatccgactgtacacttgaactgatcaggcttatttatcactatcat 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgccttaacagactgtacacttgaactgatcaggcttatttatcactatcat 264

                                                                       
Query: 65  tactggatgtatccatatgacacgtgtgctatggggtgaggagtacgcatgtgccacagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactggatgtatccatatgacacgtgtgctatggggtgaggagtacgcatgtgccacagc 324

                                                                       
Query: 125 acatggatagaggacaacttctttcctatcaccttgctgaagcagggcctttctggctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 acatggatagaggacaacttctttcctatcaccttgctgaagcagagcctttctggctgt 384

                                                                       
Query: 185 ttctgctgctctgtggactctatgctaattggcccatgatttacaggcaattcccctatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgctgctctgtggactctatgctaattggcccatgatttacaggcaattcccctatc 444

                                                                       
Query: 245 tctatcctgacacaggccttctatcctgacacaggaacactggaattagagatgcaagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctatcctgacacaggccttctatcctgacacaggaacactggaattagagatgcaagcc 504

                                                                       
Query: 305 atgctatccaggtttttgtgggttctaggaatagaattcaggtcaccccacttgctcaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgctatccaggtttttgtgggttctaggaatagaattcaggtcaccccacttgctcaga 564

                                                                       
Query: 365 aagtgtttttgccagttaagccattgctggcccttttattttaaaaacatacttatttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtgtttttgccagttaagccattgctggcccttttattttaaaaacatacttatttat 624

                    
Query: 425 tcatttctg 433
           |||||||||
Sbjct: 625 tcatttctg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_m21.g1 MSMg01no358_m21.g1 CHROMAT_FILE:
MSMg01no358_m21.g1 PHD_FILE: MSMg01no358_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:10 2005
         (245 letters)



>mm_chr2_130745715_130746359
          Length = 645

 Score =  433 bits (224), Expect = e-126
 Identities = 233/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaacagccagagttacaaagtgagaccttgactcaaaaaactacatttgcatagttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cagaacagccagagttacaaagtgagaccttgactcaaaaaactacatttgcatagttta 330

                                                                       
Query: 61  cgtagatgtatacaaagtaacaacagtaattggttaacccaagaaaatcttcaacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cgtagatgtatacaaagtaacaacagtaattggttaacccaagaaaatcttcaacaaaaa 270

                                                                       
Query: 121 gcctgatagactcaggaaagcaattttcagatgtgtgtgtatgtgtgtgtgtatgtatat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcctgatagactcaggaaaacaattttcagatgtgtgtgtatgtgtgtgtgtatgtatat 210

                                                                   
Query: 181 atatacttatatacacacatacatacatgtctatgtatatatgtgtatgtatgtgt 236
           ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 209 atatacttatatacacacatacatacatgcctatgtatatatgtgtgtgtatgtgt 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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