BAC Information

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BAC

Clone NameMSMg01-358N03
Chromosome2 (Build37)
Map Location 3,963,190 - 3,963,772
singlet/doubletsinglet
Overlap genenone
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257
Downstream geneLOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358N03.T7 (MSMg01no358_n03.b1)MSMg01-358N03.TJ (MSMg01no358_n03.g1)
ACCAG468384AG468385
length734723
length of high quality
(start - end)		588 (32 - 619)440 (62 - 501)
definitionCHROMAT_FILE: MSMg01no358_n03.b1 PHD_FILE: MSMg01no358_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:11 2005CHROMAT_FILE: MSMg01no358_n03.g1 PHD_FILE: MSMg01no358_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCTAATCT
TTCCTGACAGATCAATTCTTCTGGGCTCTTAATTATTCATGTGGCTCCCC
CTTAAATTTCCTTCAGGCTACTGGCTCTTTTGAGGCAGTAGGCTAGTTCT
GTCTCAGGCAGCTCATTTATTTCCCAGGAGGTGGGCATCTGTGCTCAGAG
CCAGAACTATAAAGAGGGCAGATGTGGGGATGGCTGAGGAGGCAGGAAGG
GGGGCAGTGGTGAGGTGTCCTGCAGGGAAAGGAGTTAGAAGGTCTCATTT
TAAAATATTACTGTCCTGCTTAGGAGCTGGCAACGTTATTCAACATCTTC
AGCAATCTCAACTGTAAAAGAATTTTTTAAAAGTTCATTAATTGTCTGGG
ACATCACAAATATCAAGTAGTAGGGAGTCACAAGTGGACCCTCCCTGAGA
ACCTTTAGCAGTTTTGTAAGCTTCAAACTTTTCTTCCTCTAGCACAGTGG
CTCTCAACCCATGAGTCACAACCCCCATGGGGGTCACATATCAGATATTC
TGCATATCAGATATTTATGATTCATAACAGTAGCAAAATTATAGTTATGA
AGAAGCACCAAAAAATAATTTTATGTTTGAGGGTCACCACAGCATGAGGA
ACTGTATTAAAGGGTCTCAGCATCACGAAGTTGTGAAGTACTGCTAACAT
ATGGTTTTCTGCACAGGAGTTCCTCCGCGGCTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCTCTGAGGAAACAGACTGGGAGGAAGAAGCAGCTCAT
TACCAGCCAGCTAATCGGTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAAG
CCAGCGTACTGTTCAGCCTCCGGGCAGTCGGTTTCAAGGTCCGCCCTATG
CGGAGCCCCCGCCCTGCGTAGTGCGTTAGCAATGCGCAGAGAGGCAATGC
GCAGAGAGACAATGCACAGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGA
GAGGCAGTGTGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATAC
AACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCGCGCT
CCGGTAGAATACGTGCAGATTAAAGAACTCGCCGAGTCGGTCCGTAAATA
CGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCTGGCA
TGGCACTAACCCCTGCCGACTGGCAAACGATTGTAAAAGCCGCTCTCCCT
AGTAGGGGCAAATATATGGAATGGAGAGTGCTTTGGTACGAGGTTGCACC
CGCGCAGGCCCGAATATAGCCATTTGCTCTTTACTCCTATCACACAGATT
GGACTTTTGACCCGTTAACGCCTCAGGTAGTTTATTCTGCTGATCTTACC
ACCTATTTTCGCCGATTTTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_n03.b1 MSMg01no358_n03.b1 CHROMAT_FILE:
MSMg01no358_n03.b1 PHD_FILE: MSMg01no358_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:11 2005
         (588 letters)



>mm_chr2_3962986_3963973
          Length = 988

 Score = 1091 bits (564), Expect = 0.0
 Identities = 579/584 (99%), Gaps = 1/584 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctaatctttcctgacagatcaattcttctgggctcttaattattcatgtggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctaatctttcctgacagatcaattcttctgggctcttaattattcatgtggc 264

                                                                       
Query: 65  tcccccttaaatttccttcaggctactggctcttttgaggcagtaggctagttctgtctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccccttaaatttccttcaggctactggctcttttgaggcagtaggctagttctgtctc 324

                                                                       
Query: 125 aggcagctcatttatttcccaggaggtgggcatctgtgctcagagccagaactataaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcagctcatttatttcccaggaggtgggcatctgtgctcagagccagaactataaaga 384

                                                                       
Query: 185 gggcagatgtggggatggctgaggaggcaggaaggggggcagtggtgaggtgtcctgcag 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 gggcagatgtggggatggctgaggaggcgggaaggggggcagtggtgaggtgtcctgcag 444

                                                                       
Query: 245 ggaaaggagttagaaggtctcattttaaaatattactgtcctgcttaggagctggcaacg 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaaggagttagaaggtctcgttttaaaatattactgtcctgcttaggagctggcaacg 504

                                                                       
Query: 305 ttattcaacatcttcagcaatctcaactgtaaaagaattttttaaaagttcattaattgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttattcaacatcttcagcaatctcaactgtaaaagaattttttaaaagttcattaattgt 564

                                                                       
Query: 365 ctgggacatcacaaatatcaagtagtagggagtcacaagtggaccctccctgagaacctt 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 ctgggacatcacaaatatcaagtagtagggtgtcacaagtggaccctccctgagaacctt 624

                                                                       
Query: 425 tagcagttttgtaagcttcaaacttttcttcctctagcacagtggctctcaacccatgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagcagttttgtaagcttcaaacttttcttcctctagcacagtggctctcaacccatgag 684

                                                                       
Query: 485 tcacaacccccatgggggtcacatatcagatattctgcatatcagatatttatgattcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcacaacccccatgggggtcacatatcagatattctgcatatcagatatttatgattcat 744

                                                       
Query: 545 aacagtagcaaaattatagttatgaagaagcaccaaaaaataat 588
           ||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 745 aacagtagcaaaattatagttatgaagaagcaa-aaaaaataat 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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